Scientific Programmer, Deutsche Telekom Laboratories, Ben-Gurion University of the Negev, Israel.
Check out my blog.
If you are here looking for the detailed description of our surfae patch library, you probably wanted to go here.
My research interest is the 3D structure of proteins, especially the surface of proteins.
My work characterizes protein surfaces using the notion of surface patches, which
are small fractions of the surface of proteins. I define a heuristic distance
measure between surface patches which is used to cluster the patches from a
large set of non redundant proteins. The resulting set of cluster centers (centroids) provides representative surface patch
structures and constitutes a surface patch library. Detailed information
can be downloaded here, or a "short" slideshow here.
Technical Report can be found
BMC Structural Biology, 2011
A library of protein surface patches discriminates between native structures and decoys generated by structure prediction servers.
Safed Bimolecular Modeling
and Simulations Research Workshop, 2009, Poster Session A New
Library of Surface Patches - Design and Applications
12th Israeli Bioinformatics Symposium, Weizmann Institute
of Science, 2009, Poster Session A New Library of Surface
Patches - Design and Applications
Computer Science and Bioinformatics
Computer Science and Bioinformatics. With Distinction.
TA System Programming: spl081; spl091; splaf093.
Bioinformatics Theory and Applications: tabio082; tabio092.
TA Data Structure: Sapir College
Room 109 (Building 37)
Ben Gurion University