Tools

RNA Structure Prediction

Context Fold

RNA Structural Alignment

FRUUT

Constrained Sequence Alignment

RL-CSA
cAlign

RNA Structural Search

STRMS
StemSearch

microRNA

microRNA Bi-Targeting

Links

Context Fold

- RNA secondary structure prediction tool

Enter RNA sequence (or sequences, one per line).
We will return the predicted secondary structures.

Enter Sequence Upload File

or upload a file (maximum 1000 nt) help ?


 Export output to file  
 Show results in a new window  


Scoring model help ?
Baseline
StHighCoHigh
StHighCoMed
StMedCoHigh
StMedCoMed
16S-Ribosomal-RNA
23S-Ribosomal-RNA
5S-Ribosomal-RNA
Group-I-Intron
Hammerhead-Ribozyme
Other-RNA
Ribonuclease-P-RNA
Signal-Recognition-Particle-RNA
Transfer-Messenger-RNA
Transfer-RNA
Unknown

Context Fold is an RNA secondary structure prediction tool. It applies feature-rich scoring models, whose parameters were obtained after training on comprehensive datasets.
A description of the scoring models and a comparison of their prediction accuracies with other models can be found in the paper "Rich Parameterization Improves RNA Structure Prediction", by Shay Zakov, Yoav Goldberg, Michael Elhadad and Michal Ziv-Ukelson.

Context Fold web interface was created by Elad Levi, 2012.