RNA Structure Prediction
RNA Structural Alignment
Constrained Sequence Alignment
RNA Structural Search

Selected awards for publications

RECOMB 2011 Best Paper Award

rna We were very happy to hear that our paper, "Rich Parameterization Improves RNA Structure Prediction", by Shay Zakov, Yoav Goldberg, Michael Elhadad and Michal Ziv-Ukelson, has received the RECOMB 2011 Best Paper Award. Thanks !

CPM 2009 Best Paper Award

rnaBest Paper Award for paper in CPM09: Sparse RNA Folding: Time and Space Efficient Algorithms, R. Backofen, D. Tsur, S. Zakov and M. Ziv-Ukelson

IBS 2008 Outstanding Poster Award

rnaIBS 2008 Outstanding Poster Award for the poster: A structure based flexible search method for ncRNA motifs, I. Veksler-Lublinsky, M. Ziv-Ukelson, D. Barash and K. Kedem, 11th Israeli Bioinformatics Symposium

CPM 2007 Best Paper Award

rnaCPM 2007 Best Paper Award for the paper: Speeding Up HMM Decoding and Training by Exploiting Sequence Repetitions, S. Mozes, O. Weimann and M. Ziv-Ukelson.

RECOMB 2006 Special Mention Award

rnaRECOMB 2006 Special Mention Award for the paper: A Study of Accessible Motifs and RNA Folding Complexity, Y. Wexler, C. Zilberstein and M. Ziv-Ukelson.