Tools

RNA Structure Prediction
RNA Structural Alignment
Constrained Sequence Alignment
RNA Structural Search
microRNA

Fast RNA Unrooted Unordered Tree Alignment

Pair   Batch
 

Global
Local

Rooted
Unrooted

Ordered
Unordered
    Ignore Dangling sequences

Example 1 - HammerHead | Example 2 - RNAse P



RNA secondary structures are often represented as trees, motivating the application of tree comparison tools to the detection of structural similarities and common motifs. We generalize some current approaches for RNA tree alignment, which are traditionally confined to ordered rooted mappings, to also consider unordered unrooted mappings.