The Israeli Society for Bioinformatics and Computational Biology
   
 

Poster Abstracts

Genomics

1 Roshan Shrestha
et al.
Ben Gurion University of the Negev Comparative genomics of the red microalgae Porphyridium sp. and Dixoniella grisea (Rhodoplantae)
2 Gila Lithwick
and
Hanah Margalit
Hebrew University of Jerusalem Relative predicted protein levels of functionally associated proteins are conserved across organisms
3 Alon Kaufman
and
Eytan Ruppin
Hebrew University of Jerusalem Exploring the Relations between Gene Expression, Synaptic Connectivity and Neuronal Functional Contributions in the C. elegans Chemosensory System
4 Yael Garten
et al.
Weizmann Institute of Science Extraction of Transcription Regulatory Signals from Genome-wide DNA-protein Interaction Data
5 Tommy Kaplan
et al.
Hebrew University of Jerusalem Histone Modification Patterns, Transcriptional Regulation and Gene Expression in Yeast
6 Shlomit Farkash-Amar
et al.
Hebrew University of Jerusalem Genome wide analysis of DNA methylation - application to cancer and X-inactivation studies
7 Ester Feldmesser
et al.
Weizmann Institute of Science Olfactory Receptors Are Expressed In Human And Mouse Ectopic Tissues
8 Yossi Neeman
et al.
Bar Ilan University A systematic search of A-to-I RNA editing in antisense transcripts
9 Tal Dagan
et al.
Tel-Aviv University A Negatory Investigation into the Doctrine of Isochores
10 Frida Belinky
and
Avraham A. Levy
Weizmann Institute of Science Computational analysis of wheat genes suggests rapid gene elimination and differential expression following genome duplication
11 Ronny Aloni
et al.
Weizmann Institute of Science Conserved Synteny and Genomic Rearrangements in the Olfactory Subgenome
12 Pinchas Akiva
et al.
Bar-Ilan University, Compugen LTD. Naturally Occurring Fused Transcripts In The Human Genome

Proteomics

13 Milana Morgenstern
and
Shmuel Pietrokovski
Weizmann Institute of Science Enhanced Statistics for Local Alignment of Multiple Alignments Improves Protein Function and Structure Prediction
14 Elik Aharonovsky
et al.
University of Haifa Protein modules: The closed loop prototype database.
15 Inbal Sela
and
Amiram Goldblum
Hebrew University of Jerusalem Structural Computational Analysis of Beta-Strands: Clustering, Potentials and Prediction
16 Michal Millo
and
Amiram Goldblum
Hebrew University of Jerusalem Bioinformatics discovery of a Myristoyl Binding Pocket of Tyrosine Kinases and subsequent Drug Design

data mining

17 Shany Ron
et al.
Weizmann Institute of Science Genedecks: Building An Optimal Bioinformatics Tool-Kit For Analysis And Data-mining For Biological Researchers

RNA structure

18 Oranit Dror
et al.
Tel-Aviv University ARTS: Alignment of RNA Tertiary Structures

Splicing

19 Martin Akerman
et al.
Technion Regulation of Alternative Splicing at Tandem Acceptors

Phylogenetics

20 Igor Ulitsky
et al.
Tel-Aviv University Information Theoretic Approaches to Whole Genome Phylogenies
21 Neta Zuckerman
et al.
Bar Ilan University Analysis of B cell clonal evolution in BM and PBL of AL and MM patients using graphical quantification of lineage trees
22 Avital Steiman
et al.
Bar Ilan University Immunoglobulin variable-region gene mutational lineage tree analysis: Application to autoimmune diseases
23 Itay Mayrose
et al.
Tel-Aviv University A Gamma mixture model better accounts for among site rate heterogeneity
24 Adi Stern
and
Tal Pupko
Tel-Aviv University Predicting Functional Regions in a Protein Using a Hidden Markov Model

Structure/Function

25 Maxim Shatsky
et al.
Tel-Aviv University Recognition of Binding Patterns Common to a Set of Protein Structures
26 Natalia Tsessin
et al.
Ben Gurion University of the Negev Cold dissociation of E. coli tryphophanase and its mutants: a structural view
27 Ran Friedman
et al.
Tel-Aviv University Molecular Dynamics Simulations of Ligand Binding
28 Leonid Brodsky
et al.
Tel-Aviv University Detection of Functional Regions in Proteins by "Linearized" Representation of Three Dimensional Structures
29 David Marcus
and
Amiram Goldblum
Hebrew University of Jerusalem Using Multiple Binding Modes in Structure Based Drug Design

Gene prediction

30 Tirza Doniger
et al.
Bar Ilan University A genome-wide scan for novel single-stem H/ACA-like snoRNA
31 Ronen Shemesh
et al.
Compugen Ltd. Processed Pseudogenes as predictors of alternative splicing

Structure prediction

32 Milana Frenkel-Morgenstern
et al.
Weizmann Institute of Science New approach to detect sites in physical contacts based on multiple sequence alignment
33 Chen Yanover
et al.
Hebrew University of Jerusalem Predicting Protein-Peptide Binding Affinity by Learning Peptide-Peptide Distance Functions
34 Zakharia Frenkel
and
Edward Trifonov
University of Haifa Small protein modules with similar 3D structure but different amino acid sequence
35 Sarel Fleishman
and
Nir Ben-Tal
Tel-Aviv University A C-alpha model structure of the gap-junction transmembrane domain
36 Alexander Berchanski
et al.
Bar Ilan University Bioinformatical and Structural studies of HDAC proteins and their inhibitors
37 Vladimir Sobolev
et al.
Weizmann Institute of Science SPACE: A suite of tools for protein Structure Prediction and Analysis based on Complementarity and Environment
38 Ami Levy-Moonshine
et al.
Ben Gurion University of the Negev A cooperative energy term for hydrogen bonds

Structural genomics

39 Alex Berchanski
and
Ron Unger
Bar Ilan University Analysis of Partial Protein Structures in the PDB Database
40 Einat Sitbon
and
Shmuel Pietrokovski
Weizmann Institute of Science Protein evolution and biophysics
41 Dan Reshef
et al.
Ben Gurion University of the Negev Prediction of Functional Sites in Protein Structures using Energy Functions
42 Keren Lasker
et al.
Tel-Aviv University Discovery of Protein Substructures in EM Maps

Protein/Protein

43 Alexandra Shulman-Peleg
et al.
Tel-Aviv University MAPPIS: Multiple 3D Alignment of Protein-Protein Interfaces
44 Moti Zviling
et al.
Hebrew University of Jerusalem Genetic Algorithm-Based Optimization of Hydrophobicity Tables

Systems biology

45 Aviv Mezer
et al.
Tel-Aviv University A New Platform To Study The Molecular Mechanisms Of Exocytosis
46 Oleg Rokhlenko
et al.
Technion Computational Methods for Searching and Comparison of Biochemical Pathways
47 Ran Kafri
and
Yitzhak Pilpel
Weizmann Institute of Science Transcriptional reprogramming in genetic backup circuits
48 Yuval Tabach
et al.
Weizmann Institute of Science A promoter architecture of human cell cycle genes implements a fuzzy-logical integration of two tumor suppressive pathways during in-vitro transformation
49 Israel Steinfeld
et al.
Tel-Aviv University Organization of the Yeast Molecular Network by Integrated Analysis of Genome-wide Data
50 Nir Yosef
et al.
Tel-Aviv University Obtaining a Functional Pathway Description from Multi-Knockout Data
51 Shay Winter
et al.
Weizmann Institute of Science THE UPS AND DOWNS OF BIOLOGICAL TIMERS
52 Yair Horesh
and
Ron Unger
Bar Ilan University Using A* For Calculating Edit Distance Between Rooted-Unlabeled Trees

Microarrays

53 Doron Lipson
et al.
Technion Interval Scores for Quality Annotated CGH Data
54 Ido Priness
and
Irad Ben-Gal
Tel-Aviv University On Performance Measures For Gene Expression Clustering
55 Lilach Soreq
et al.
Hebrew University of Jerusalem GOdist analysis of biological functions regulated by the transcription factor Math1
56 Oded Vainas
and
Itamar Simon
Hebrew University of Jerusalem Long range Chip-On-Chip application for identifying target genes with distal regulatory elements
57 Carmiya Bar-Or
et al.
Hebrew University of Jerusalem How Efective Are Cros-scpecies Hybridizations to Spoted Microarays?
58 Dikla Dotan
et al.
Ben Gurion University of the Negev Sleeved CoClustering for identification of tightly co-expressed genes
59 Itamar Simon
and
Elbaz Yedid
Hebrew University of Jerusalem The curse of too much information - assessing Affymetrix array quality through the comparison of multiple probe sets of the same gene
60 Mark Katzenellenbogen
et al.
Hebrew University of Jerusalem The supervised pairwise gene expression analysis of chronic liver disease.

Other

61 Eddo Kim
and
Yossef Kliger
Bar Ilan University Alignment-Independent Homology Assessment
62 Yoseph Barash
et al.
Hebrew University of Jerusalem Analyzing Genes in a SNAP
63 Yael Altuvia
et al.
Hebrew University of Jerusalem Clustering and conservation patterns of human miRNAs: Implications for miRNA prediction
64 Avi Taib
and
Amiram Goldblum
Hebrew University of Jerusalem Improving the Iterative Stochastic Elimination Algorithm
65 Ohad Givaty
and
Amiram Goldblum
Hebrew University of Jerusalem In Silico Protein Redesign: using a combination of evolutionary information and pairwise distance-dependent contact potential to predict more stable sequences for known structures
66 Miriam Eisenstein
et al.
Weizmann Institute of Science Looking at enzymes from the inside out: The proximity of catalytic residues to the molecular centroid can be used for identification of active sites.
67 Mark Silberstein
et al.
Technion Online distributed system for LOD score computations on large pedigrees
68 Tal Tabakman
et al.
Hebrew University of Jerusalem Predicting the effects of backbone variability on protein design from unbound and bound proteins
69 Ydo Wexler
et al.
Technion Variational Inference Procedures for Genetic Linkage Analysis

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