Tools

RNA Structure Prediction

Context Fold

RNA Structural Alignment

FRUUT

Constrained Sequence Alignment

RL-CSA
cAlign

RNA Structural Search

STRMS
StemSearch

microRNA

microRNA Bi-Targeting

News



Our paper in ISMB 2013

26 May, 2013

ismb2013ISMB 2013 - 21th Annual International Conference on Intelligent Systems for Molecular Biology, Berlin, July 19 - 23, 2013. Alex Lan, Michal Ziv-Ukelson and Esti Yeger-Lotem, A Context-Sensitive Framework for the Analysis of Human Signalling Pathways in Molecular Interaction Networks. link to citation


ContextFold praised by comparative analysis of RNA folders (NAR 2013)

08 March, 2013

"... rankings based on the RNAstrand data set were dominated by single-sequence methods: in 7 of 10 rankings, ContextFold was the best performing method..." CompaRNA paper in NAR: CompaRNA: a server for continuous benchmarking of automated methods for RNA secondary structure prediction, by Puton, Kozlowski, Rother, and Bujnicki, Nucleic Acids Research (2013).


Our paper in CPM 2013

05 March, 2013

cpmCPM 2013 - The 24th Annual Symposium on Combinatorial Pattern Matching, Bad Herrenalb, Germany, June 17–19, 2013: "Efficient All Path Score Computations on Grid Graphs", by Ury Metarrazo, Dekel Tsur and Michal Ziv-Ukelson link to citation


Hosting IBS-2013 in BGU

18 February, 2013

alonWe are happy to announce the 15th Israeli Bioinformatics Symposium, which will take place on June 27th 2013 at Ben-Gurion University of the Negev.


Context Fold Server update

02 August, 2012

Context Fold server has a new and improved interactive web interface, thanks to Elad Levi


Our paper in WABI 2012

29 June, 2012

algo2012WABI 2012 - September 2012 - Ljubljana, Slovenia: "RNA Tree Comparisons Via Unrooted Unordered Alignments". by Nimrod Milo, Shay Zakov, Erez Katzenelson, Eitan Bachmat, Yefim Dinitz and Michal Ziv-Ukelson. link


EMC Teaching and Research award - 2012

21 June, 2012

emc Congratulations to Isana Veksler-Lublinsky for winning EMC award for Teaching and Research for 2012


RECOMB 2011 Best Paper Award

31 March, 2011

rna We were very happy to hear that our paper, "Rich Parameterization Improves RNA Structure Prediction", by Shay Zakov, Yoav Goldberg, Michael Elhadad and Michal Ziv-Ukelson, has received the RECOMB 2011 Best Paper Award. Thanks !


Our paper in CPM 2011

14 March, 2011

Palermo in June for CPM 2011: "Edit Distance with Duplications and Contractions Revisited". by Tamar Pinhas, Dekel Tsur, Shay Zakov, and Michal Ziv-Ukelson. link