contextFold.scoring
Class StructreElementsScorerImpl

java.lang.Object
  extended by contextFold.scoring.StructreElementsScorerImpl
All Implemented Interfaces:
StructreElementsScorer

public class StructreElementsScorerImpl
extends java.lang.Object
implements StructreElementsScorer


Constructor Summary
StructreElementsScorerImpl(int[][][] features, int[][][] scores, int seqLength)
           
 
Method Summary
 int elementScore(int type, int val)
           
 int[][][] getFeatures()
           
 RNA getRna()
           
 int[][][] getScores()
           
 int sequenceLength()
           
 void setManagerAndRNA(FeatureManager manager, RNA rna)
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

StructreElementsScorerImpl

public StructreElementsScorerImpl(int[][][] features,
                                  int[][][] scores,
                                  int seqLength)
Method Detail

elementScore

public int elementScore(int type,
                        int val)
Specified by:
elementScore in interface StructreElementsScorer

sequenceLength

public int sequenceLength()
Specified by:
sequenceLength in interface StructreElementsScorer

getScores

public int[][][] getScores()

getFeatures

public int[][][] getFeatures()

setManagerAndRNA

public void setManagerAndRNA(FeatureManager manager,
                             RNA rna)

getRna

public RNA getRna()
Specified by:
getRna in interface StructreElementsScorer