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Packages that use ContextFeatureExtractor | |
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contextFold.features | Contains scoring model's parameterization related functionalities. |
contextFold.models | Contains a set of pre-defined (untrained) parameterizations. |
Uses of ContextFeatureExtractor in contextFold.features |
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Subclasses of ContextFeatureExtractor in contextFold.features | |
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class |
DoublePosContext
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class |
SinglePosContext
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Fields in contextFold.features declared as ContextFeatureExtractor | |
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protected ContextFeatureExtractor |
DoublePosContext.firstPosContext
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protected ContextFeatureExtractor |
ContextFeatureExtractor.reversedContext
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protected ContextFeatureExtractor |
DoublePosContext.secondPosContext
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Methods in contextFold.features that return ContextFeatureExtractor | |
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ContextFeatureExtractor |
DoublePosContext.getFirstPosContext()
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ContextFeatureExtractor |
ContextFeatureExtractor.getReversedContext()
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ContextFeatureExtractor |
DoublePosContext.getSecondPosContext()
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ContextFeatureExtractor |
SinglePosContext.getSuperContext(ContextFeatureExtractor other)
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ContextFeatureExtractor |
DoublePosContext.getSuperContext(ContextFeatureExtractor other)
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abstract ContextFeatureExtractor |
ContextFeatureExtractor.getSuperContext(ContextFeatureExtractor other)
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Methods in contextFold.features with parameters of type ContextFeatureExtractor | |
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void |
FeatureManager.addBaseContext(ContextFeatureExtractor context,
java.lang.Boolean isReversed)
Context adding |
void |
FeatureManager.addBasepairContext(ContextFeatureExtractor context,
java.lang.Boolean isReversed)
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boolean |
ContextFeatureExtractor.contained(ContextFeatureExtractor context)
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java.lang.Integer[][] |
SinglePosContext.getFeaturesMap(ContextFeatureExtractor specificContext)
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java.lang.Integer[][] |
DoublePosContext.getFeaturesMap(ContextFeatureExtractor specificContext)
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abstract java.lang.Integer[][] |
ContextFeatureExtractor.getFeaturesMap(ContextFeatureExtractor other)
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ContextFeatureExtractor |
SinglePosContext.getSuperContext(ContextFeatureExtractor other)
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ContextFeatureExtractor |
DoublePosContext.getSuperContext(ContextFeatureExtractor other)
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abstract ContextFeatureExtractor |
ContextFeatureExtractor.getSuperContext(ContextFeatureExtractor other)
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Constructors in contextFold.features with parameters of type ContextFeatureExtractor | |
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DoublePosContext(ContextFeatureExtractor firstPosContext,
ContextFeatureExtractor secondPosContext)
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Uses of ContextFeatureExtractor in contextFold.models |
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Methods in contextFold.models with parameters of type ContextFeatureExtractor | |
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protected java.util.Collection<FeatureTemplate> |
FeatureSetter.addTemplates(java.lang.String templatePrefix,
ContextFeatureExtractor[] contexts,
int... types)
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