Uses of Class
contextFold.features.AbstractFeatureVector

Packages that use AbstractFeatureVector
contextFold.features Contains scoring model's parameterization related functionalities. 
contextFold.scoring Contains RNA secondary structure scoring and similarity computation related utilities. 
 

Uses of AbstractFeatureVector in contextFold.features
 

Subclasses of AbstractFeatureVector in contextFold.features
 class DenseFeatureVector
          A dense implementation of a feature vector
 class SparseFeatureVector
           
 

Methods in contextFold.features that return AbstractFeatureVector
 AbstractFeatureVector FeatureManager.getElementFeaturs(RNA rna, int elementType, int val1)
           
 AbstractFeatureVector FeatureManager.getElementWeightedFeaturs(RNA rna, int elementType, int val1)
           
 

Methods in contextFold.features with parameters of type AbstractFeatureVector
 void DenseFeatureVector.add(AbstractFeatureVector other)
           
 void AbstractFeatureVector.add(AbstractFeatureVector other)
          The same as add(AbstractFeatureVector, float), where amount = 1.
 void AbstractFeatureVector.add(AbstractFeatureVector other, float amount)
          Adds to this object another weight vector.
 float DenseFeatureVector.dot(AbstractFeatureVector other)
           
 float AbstractFeatureVector.dot(AbstractFeatureVector other)
           
 void DenseFeatureVector.sub(AbstractFeatureVector other)
           
 void AbstractFeatureVector.sub(AbstractFeatureVector other)
          The same as sub(AbstractFeatureVector, float), where amount = 1.
 void DenseFeatureVector.sub(AbstractFeatureVector other, float amount)
           
 void AbstractFeatureVector.sub(AbstractFeatureVector other, float amount)
          The same as add(AbstractFeatureVector, float), where other is being subtracted rather than added.
 java.lang.String SparseFeatureVector.toString(AbstractFeatureVector weights)
           
 java.lang.String SparseFeatureVector.toString(AbstractFeatureVector weights, boolean printColumn)
           
 void DenseFeatureVector.update(AbstractFeatureVector other, float s)
          Executes add(other, s), while maintaining an inner state that allows averaging over all updates.
 

Constructors in contextFold.features with parameters of type AbstractFeatureVector
SparseFeatureVector(AbstractFeatureVector toCopy)
           
 

Uses of AbstractFeatureVector in contextFold.scoring
 

Methods in contextFold.scoring that return AbstractFeatureVector
 AbstractFeatureVector FoldEvaluatorImpl.differenceFeatureVector(int[] guessFold, int[] goldFold, RNA rna)
           
 AbstractFeatureVector FoldEvaluator.differenceFeatureVector(int[] guessFold, int[] goldFold, RNA rna)
           
 

Methods in contextFold.scoring with parameters of type AbstractFeatureVector
 void FoldEvaluatorImpl.differenceFeatureVector(int[] guessFold, int[] goldFold, AbstractFeatureVector diffVector, RNA rna)
           
 void FoldEvaluator.differenceFeatureVector(int[] guessFold, int[] goldFold, AbstractFeatureVector result, RNA rna)
          Computes the feature difference between two foldings.