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main(String[])
- Static method in class contextFold.app.
Predict
main(String[])
- Static method in class contextFold.app.
PrintModelFeatures
main(String[])
- Static method in class contextFold.app.
Train
main(String[])
- Static method in class contextFold.app.
ValidatePrediction
main(String[])
- Static method in class contextFold.common.
TrainAnnotations
main(String[])
- Static method in class contextFold.rna.
RandomSplit
main(String[])
- Static method in class contextFold.rnaFolding.
Folder
main(String[])
- Static method in class contextFold.scoring.
PredictionQuality
make(String)
- Static method in class contextFold.features.
FeatureManager
makeContexts(int[][], byte[])
- Static method in class contextFold.features.
Context
makeRepresentativeContexts(int)
- Method in class contextFold.features.
FeatureManager
max()
- Method in class contextFold.features.
DenseFeatureVector
MAX_INT_FEATURE_WEIGHT
- Static variable in class contextFold.common.
Env
MAX_SERVER_SEQUENCE_LENGTH
- Static variable in class contextFold.common.
Env
maxSuperContextCardinality
- Static variable in class contextFold.common.
Env
maxSuperContextCardinalityTrain
- Static variable in class contextFold.common.
Env
min()
- Method in class contextFold.features.
DenseFeatureVector
MIN_HAIRPIN_LENGTH
- Static variable in class contextFold.common.
Env
MIN_HAIRPIN_LENGTH
- Static variable in interface contextFold.rnaFolding.
StructureRecognizer
missingRequired()
- Method in class contextFold.common.
CmdArgumentsHandler
ML_BASE
- Variable in class contextFold.rnaFolding.
StructureRecognizerImpl
ML_CLOSE
- Variable in class contextFold.rnaFolding.
StructureRecognizerImpl
ML_OPEN
- Variable in class contextFold.rnaFolding.
StructureRecognizerImpl
modify(String)
- Method in class contextFold.common.
StringModifier
MORE_THAN_ONE_BRANCH
- Static variable in class contextFold.rnaFolding.
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