contextFold.rnaFolding
Interface StructureRecognizer
- All Superinterfaces:
- java.io.Serializable
- All Known Implementing Classes:
- StructureRecognizerImpl
public interface StructureRecognizer
- extends java.io.Serializable
UNPAIRED_BASE
static final int UNPAIRED_BASE
- See Also:
- Constant Field Values
MIN_HAIRPIN_LENGTH
static final int MIN_HAIRPIN_LENGTH
numTypes
int numTypes()
isBaseType
boolean isBaseType(int type)
isBasepairType
boolean isBasepairType(int type)
isLengthType
boolean isLengthType(int type)
getFirstBaseType
int getFirstBaseType()
getLastBaseType
int getLastBaseType()
getFirstBasepairType
int getFirstBasepairType()
getLastBasepairType
int getLastBasepairType()
getFirstLengthType
int getFirstLengthType()
getLastLengthType
int getLastLengthType()
getCombinedElements
java.util.Collection<int[]> getCombinedElements(int[] fold)
getElementName
java.lang.String getElementName(int elementType)
elementToString
java.lang.String elementToString(int[] element)
sortElements
void sortElements(java.util.List<int[]> elements)