Uses of Class
contextFold.features.FeatureManager

Packages that use FeatureManager
contextFold.app Contains java-executable programs that perform the main functionalities of the contextFold package. 
contextFold.features Contains scoring model's parameterization related functionalities. 
contextFold.learn Contains weight learning related functionalities. 
contextFold.models Contains a set of pre-defined (untrained) parameterizations. 
contextFold.rnaFolding Contains RNA secondary structure prediction related utilities. 
contextFold.scoring Contains RNA secondary structure scoring and similarity computation related utilities. 
 

Uses of FeatureManager in contextFold.app
 

Methods in contextFold.app with parameters of type FeatureManager
static void Predict.predictAll(FeatureManager featureManager, java.lang.String outputPath, java.util.List<RNA> rnas)
           
static void Predict.predictAll(FeatureManager featureManager, java.lang.String output, java.util.List<RNA> rnas, java.lang.String echoStr)
           
 

Uses of FeatureManager in contextFold.features
 

Methods in contextFold.features that return FeatureManager
static FeatureManager FeatureManager.make(java.lang.String model)
           
 

Uses of FeatureManager in contextFold.learn
 

Constructors in contextFold.learn with parameters of type FeatureManager
Learn(FeatureManager featureManager, FoldEvaluator foldEvaluator, int kbest, LossCalculator lossCalculator)
           
 

Uses of FeatureManager in contextFold.models
 

Fields in contextFold.models declared as FeatureManager
protected  FeatureManager FeatureSetter.featureManager
           
 

Methods in contextFold.models that return FeatureManager
 FeatureManager FeatureSetter.setFeatures()
           
 

Uses of FeatureManager in contextFold.rnaFolding
 

Fields in contextFold.rnaFolding declared as FeatureManager
 FeatureManager Folder.fm
           
 

Methods in contextFold.rnaFolding with parameters of type FeatureManager
 void Folder.setFeatureManager(FeatureManager featureManager)
          A setter to the feature manager of the folder (the scoring model).
 

Constructors in contextFold.rnaFolding with parameters of type FeatureManager
Folder(FeatureManager featureManager)
          Construct a folder which uses the scoring model of the given feature manager.
 

Uses of FeatureManager in contextFold.scoring
 

Methods in contextFold.scoring with parameters of type FeatureManager
 void StructreElementsScorerImpl.setManagerAndRNA(FeatureManager manager, RNA rna)
           
 

Constructors in contextFold.scoring with parameters of type FeatureManager
FoldEvaluatorImpl(FeatureManager featureManager)