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Packages that use FeatureManager | |
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contextFold.app | Contains java-executable programs that perform the main functionalities of the contextFold package. |
contextFold.features | Contains scoring model's parameterization related functionalities. |
contextFold.learn | Contains weight learning related functionalities. |
contextFold.models | Contains a set of pre-defined (untrained) parameterizations. |
contextFold.rnaFolding | Contains RNA secondary structure prediction related utilities. |
contextFold.scoring | Contains RNA secondary structure scoring and similarity computation related utilities. |
Uses of FeatureManager in contextFold.app |
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Methods in contextFold.app with parameters of type FeatureManager | |
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static void |
Predict.predictAll(FeatureManager featureManager,
java.lang.String outputPath,
java.util.List<RNA> rnas)
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static void |
Predict.predictAll(FeatureManager featureManager,
java.lang.String output,
java.util.List<RNA> rnas,
java.lang.String echoStr)
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Uses of FeatureManager in contextFold.features |
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Methods in contextFold.features that return FeatureManager | |
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static FeatureManager |
FeatureManager.make(java.lang.String model)
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Uses of FeatureManager in contextFold.learn |
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Constructors in contextFold.learn with parameters of type FeatureManager | |
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Learn(FeatureManager featureManager,
FoldEvaluator foldEvaluator,
int kbest,
LossCalculator lossCalculator)
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Uses of FeatureManager in contextFold.models |
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Fields in contextFold.models declared as FeatureManager | |
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protected FeatureManager |
FeatureSetter.featureManager
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Methods in contextFold.models that return FeatureManager | |
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FeatureManager |
FeatureSetter.setFeatures()
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Uses of FeatureManager in contextFold.rnaFolding |
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Fields in contextFold.rnaFolding declared as FeatureManager | |
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FeatureManager |
Folder.fm
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Methods in contextFold.rnaFolding with parameters of type FeatureManager | |
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void |
Folder.setFeatureManager(FeatureManager featureManager)
A setter to the feature manager of the folder (the scoring model). |
Constructors in contextFold.rnaFolding with parameters of type FeatureManager | |
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Folder(FeatureManager featureManager)
Construct a folder which uses the scoring model of the given feature manager. |
Uses of FeatureManager in contextFold.scoring |
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Methods in contextFold.scoring with parameters of type FeatureManager | |
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void |
StructreElementsScorerImpl.setManagerAndRNA(FeatureManager manager,
RNA rna)
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Constructors in contextFold.scoring with parameters of type FeatureManager | |
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FoldEvaluatorImpl(FeatureManager featureManager)
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