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id
- Variable in class contextFold.features.
Context
IL_BASE
- Variable in class contextFold.rnaFolding.
StructureRecognizerImpl
IL_CLOSE
- Variable in class contextFold.rnaFolding.
StructureRecognizerImpl
IL_LONG
- Variable in class contextFold.rnaFolding.
StructureRecognizerImpl
IL_MAX_IX
- Variable in class contextFold.rnaFolding.
StructureRecognizerImpl
IL_MEDIUM
- Variable in class contextFold.rnaFolding.
StructureRecognizerImpl
IL_MEDIUM_LENGTH
- Variable in class contextFold.rnaFolding.
StructureRecognizerImpl
IL_MEDIUM_MAX_TOTAL_LENGTH
- Variable in class contextFold.rnaFolding.
StructureRecognizerImpl
IL_OPEN
- Variable in class contextFold.rnaFolding.
StructureRecognizerImpl
IL_SHORT_MAX_IX
- Variable in class contextFold.rnaFolding.
StructureRecognizerImpl
IlLengthCalculator
- Class in
contextFold.features
IlLengthCalculator()
- Constructor for class contextFold.features.
IlLengthCalculator
inclusionMap(Context)
- Method in class contextFold.features.
Context
initializeTables(int)
- Method in class contextFold.rnaFolding.
Folder
initWeight(Collection<FeatureTemplate>, FeatureExtractor, FeatureExtractor, float, String...)
- Method in class contextFold.features.
FeatureManager
initWeights
- Variable in class contextFold.features.
FeatureTemplate
IntervalLengthCalculator
- Class in
contextFold.features
IntervalLengthCalculator()
- Constructor for class contextFold.features.
IntervalLengthCalculator
intValue(String)
- Method in class contextFold.common.
CmdArgumentsHandler
intWeights
- Variable in class contextFold.features.
DenseFeatureVector
isBasepairType(int)
- Method in interface contextFold.rnaFolding.
StructureRecognizer
isBasepairType(int)
- Method in class contextFold.rnaFolding.
StructureRecognizerImpl
isBaseType(int)
- Method in interface contextFold.rnaFolding.
StructureRecognizer
isBaseType(int)
- Method in class contextFold.rnaFolding.
StructureRecognizerImpl
isCompressed
- Variable in class contextFold.features.
DenseFeatureVector
isLengthType(int)
- Method in interface contextFold.rnaFolding.
StructureRecognizer
isLengthType(int)
- Method in class contextFold.rnaFolding.
StructureRecognizerImpl
isPseudoFold(String)
- Static method in class contextFold.rna.
RNA
isStandardRNAChar(char)
- Static method in class contextFold.rna.
RNA
isStandardRNAString(String)
- Static method in class contextFold.rna.
RNA
ITEM_GROUP
- Static variable in class contextFold.rna.
OneLineReader
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