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R
random
- Static variable in class contextFold.common.
Env
randomRNA(int)
- Static method in class contextFold.rna.
RNA
randomRNAString(int)
- Static method in class contextFold.rna.
RNA
RandomSplit
- Class in
contextFold.rna
RandomSplit()
- Constructor for class contextFold.rna.
RandomSplit
readList(CharSequence)
- Method in class contextFold.rna.
OneLineReader
readList(CharSequence)
- Method in class contextFold.rna.
RNAListReader
readList(File)
- Method in class contextFold.rna.
RNAListReader
readList(CharSequence)
- Method in class contextFold.rna.
RNAStrandReader
REDUCED
- Static variable in class contextFold.features.
WordFeatureCalculator
REDUCED_ALPHABET
- Static variable in class contextFold.features.
WordFeatureCalculator
removeArg(String, List<String>)
- Static method in class contextFold.common.
CmdArgumentsHandler
resetCounts()
- Method in class contextFold.rnaFolding.
Folder
reversedContext
- Variable in class contextFold.features.
ContextFeatureExtractor
RNA
- Class in
contextFold.rna
RNA(String, String)
- Constructor for class contextFold.rna.
RNA
RNA(String)
- Constructor for class contextFold.rna.
RNA
RNA(byte[], String)
- Constructor for class contextFold.rna.
RNA
RNA_Filter
- Class in
contextFold.rna
RNA_Filter()
- Constructor for class contextFold.rna.
RNA_Filter
RNAItemPattern
- Static variable in class contextFold.rna.
OneLineReader
RNAItemRegexp
- Static variable in class contextFold.rna.
OneLineReader
RNALine_Regexp
- Static variable in class contextFold.rna.
OneLineReader
RNAListReader
- Class in
contextFold.rna
RNAListReader()
- Constructor for class contextFold.rna.
RNAListReader
RNAListStatistics(List<RNA>)
- Static method in class contextFold.rna.
RNA
RNAStrandReader
- Class in
contextFold.rna
RNAStrandReader()
- Constructor for class contextFold.rna.
RNAStrandReader
RNAStrPattern
- Static variable in class contextFold.rna.
RNA
RNAWriter
- Class in
contextFold.rna
RNAWriter(File)
- Constructor for class contextFold.rna.
RNAWriter
RNAWriter(PrintStream)
- Constructor for class contextFold.rna.
RNAWriter
ROUND
- Static variable in class contextFold.rna.
RNA
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