contextFold.app
Class ValidatePrediction

java.lang.Object
  extended by contextFold.app.ValidatePrediction

public class ValidatePrediction
extends java.lang.Object

Validates the quality of a prediction file, which was obtained as an output from the Predict program.
Usage (from the 'ContextFold' directory):
    "java -cp bin contextFold.app.ValidatePrediction <arg1 name>:X1 <arg2 name>:X2 ...", where Xi is the value to assign for the i-th argument.

Usage examples:
    java -cp bin contextFold.app.ValidatePrediction path:predictions/sequences.pred
    java -cp bin contextFold.app.ValidatePrediction path:predictions/sequences.pred verbose binSize:150

Required argument:
    path - A path to a folding prediction file.

Main optional arguments (use the 'man' argument for the complete list):
    man - Prints the usage manual.
    verbose - Verbose mode (Allowed values: false (default), true).
    binSize - Size of length bin used in the verbose mode (Default: 100).


Constructor Summary
ValidatePrediction()
           
 
Method Summary
static void main(java.lang.String[] args)
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

ValidatePrediction

public ValidatePrediction()
Method Detail

main

public static void main(java.lang.String[] args)
                 throws java.io.IOException
Throws:
java.io.IOException