Overview
Package
Class
Use
Tree
Deprecated
Index
Help
PREV LETTER
NEXT LETTER
FRAMES
NO FRAMES
All Classes
A
B
C
D
E
F
G
H
I
J
L
M
N
O
P
R
S
T
U
V
W
X
L
LAST_BASE_TYPE
- Variable in class contextFold.rnaFolding.
StructureRecognizerImpl
LAST_LENGTH_TYPE
- Variable in class contextFold.rnaFolding.
StructureRecognizerImpl
LAST_LOOP_TERMINATION_TYPE
- Variable in class contextFold.rnaFolding.
StructureRecognizerImpl
lastPrediction()
- Method in class contextFold.rna.
RNA
Learn
- Class in
contextFold.learn
Implements the machine-learning algorithm for inferring feature weight parameters.
Learn(FeatureManager, FoldEvaluator, int, LossCalculator)
- Constructor for class contextFold.learn.
Learn
learn(int, List<RNA>, String, int, boolean, float, int, boolean)
- Method in class contextFold.learn.
Learn
length
- Variable in class contextFold.features.
ContextFeatureExtractor
length
- Variable in class contextFold.rna.
RNA
LENGTH_TYPES_NUM
- Variable in class contextFold.rnaFolding.
StructureRecognizerImpl
load(Class<T>, String)
- Static method in class contextFold.common.
Utils
loadWeights(String)
- Method in class contextFold.features.
FeatureManager
loadWeights(String, float)
- Method in class contextFold.features.
FeatureManager
LOG_VALUE_CALCULATOR
- Static variable in class contextFold.features.
ValueCalculator
LogLengthValueFeature
- Class in
contextFold.features
LogLengthValueFeature()
- Constructor for class contextFold.features.
LogLengthValueFeature
LONG
- Static variable in class contextFold.models.
FeatureSetter
longValue(String)
- Method in class contextFold.common.
CmdArgumentsHandler
LOOP_TERMINATION_TYPES_NUM
- Variable in class contextFold.rnaFolding.
StructureRecognizerImpl
loss(int[], int[])
- Method in class contextFold.scoring.
FMeasureLossCalculator
loss(int[], int[])
- Method in class contextFold.scoring.
HammingLossCalculator
loss(int[], int[])
- Method in interface contextFold.scoring.
LossCalculator
General distance measurements between two foldings.
LossCalculator
- Interface in
contextFold.scoring
Overview
Package
Class
Use
Tree
Deprecated
Index
Help
PREV LETTER
NEXT LETTER
FRAMES
NO FRAMES
All Classes
A
B
C
D
E
F
G
H
I
J
L
M
N
O
P
R
S
T
U
V
W
X