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Packages that use StructreElementsScorer | |
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contextFold.features | Contains scoring model's parameterization related functionalities. |
contextFold.learn | Contains weight learning related functionalities. |
contextFold.rnaFolding | Contains RNA secondary structure prediction related utilities. |
contextFold.scoring | Contains RNA secondary structure scoring and similarity computation related utilities. |
Uses of StructreElementsScorer in contextFold.features |
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Methods in contextFold.features that return StructreElementsScorer | |
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StructreElementsScorer |
FeatureManager.getElementScorer(RNA rna)
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Uses of StructreElementsScorer in contextFold.learn |
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Methods in contextFold.learn with parameters of type StructreElementsScorer | |
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protected int[][] |
Learn.getFolds(StructreElementsScorer Gs)
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Uses of StructreElementsScorer in contextFold.rnaFolding |
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Methods in contextFold.rnaFolding with parameters of type StructreElementsScorer | |
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float |
Folder.computeDPTables(StructreElementsScorer es,
java.util.List<int[]> optFoldings,
int numOfOutputFoldings)
Fills the dynamic programming scoring tables. |
protected int[] |
Traceback.traceback(int[][] _scores_3,
int[] _cot,
int[] _il,
int[] _ml1,
int[] _ml2,
int[][] _rowOctIxs,
StructreElementsScorer _es,
int _n,
int[] _hpBaseAccumScores,
int[] _hpLengthScores,
int[] _ilBaseScores,
int[] _mlBaseScores,
int[][] _ilLengthScores,
int[] _ilAccumBases,
StructureRecognizerImpl _csr)
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Uses of StructreElementsScorer in contextFold.scoring |
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Classes in contextFold.scoring that implement StructreElementsScorer | |
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class |
StructreElementsScorerImpl
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