contextFold.rna
Class OneLineReader

java.lang.Object
  extended by contextFold.rna.RNAListReader
      extended by contextFold.rna.OneLineReader

public class OneLineReader
extends RNAListReader


Field Summary
static int ANNOTATION_GROUP
           
static java.lang.String extendedRNARegexp
           
static java.lang.String FoldingLineRegexp
           
static java.lang.String FoldingRegexp
           
static int ITEM_GROUP
           
static java.util.regex.Pattern RNAItemPattern
           
static java.lang.String RNAItemRegexp
           
static java.lang.String RNALine_Regexp
           
static int SEQUENCE_GROUP
           
static int STRUCTURE_GROUP
           
 
Constructor Summary
OneLineReader()
           
 
Method Summary
 java.util.List<RNA> readList(java.lang.CharSequence list)
           
 
Methods inherited from class contextFold.rna.RNAListReader
readList
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

extendedRNARegexp

public static final java.lang.String extendedRNARegexp
See Also:
Constant Field Values

FoldingRegexp

public static final java.lang.String FoldingRegexp
See Also:
Constant Field Values

RNALine_Regexp

public static final java.lang.String RNALine_Regexp
See Also:
Constant Field Values

FoldingLineRegexp

public static final java.lang.String FoldingLineRegexp
See Also:
Constant Field Values

RNAItemRegexp

public static final java.lang.String RNAItemRegexp
See Also:
Constant Field Values

RNAItemPattern

public static final java.util.regex.Pattern RNAItemPattern

ITEM_GROUP

public static final int ITEM_GROUP
See Also:
Constant Field Values

ANNOTATION_GROUP

public static final int ANNOTATION_GROUP
See Also:
Constant Field Values

SEQUENCE_GROUP

public static final int SEQUENCE_GROUP
See Also:
Constant Field Values

STRUCTURE_GROUP

public static final int STRUCTURE_GROUP
See Also:
Constant Field Values
Constructor Detail

OneLineReader

public OneLineReader()
Method Detail

readList

public java.util.List<RNA> readList(java.lang.CharSequence list)
Specified by:
readList in class RNAListReader