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DEBUG_MODE
- Static variable in class contextFold.common.
Env
defaultModel
- Static variable in class contextFold.common.
Env
DenseFeatureVector
- Class in
contextFold.features
A dense implementation of a feature vector
DenseFeatureVector(int)
- Constructor for class contextFold.features.
DenseFeatureVector
A constructor.
DenseFeatureVector(int, float)
- Constructor for class contextFold.features.
DenseFeatureVector
A constructor.
DenseFeatureVector(DenseFeatureVector)
- Constructor for class contextFold.features.
DenseFeatureVector
A copy constructor.
differenceFeatureVector(int[], int[], AbstractFeatureVector, RNA)
- Method in interface contextFold.scoring.
FoldEvaluator
Computes the feature difference between two foldings.
differenceFeatureVector(int[], int[], RNA)
- Method in interface contextFold.scoring.
FoldEvaluator
differenceFeatureVector(int[], int[], AbstractFeatureVector, RNA)
- Method in class contextFold.scoring.
FoldEvaluatorImpl
differenceFeatureVector(int[], int[], RNA)
- Method in class contextFold.scoring.
FoldEvaluatorImpl
dim()
- Method in class contextFold.features.
DenseFeatureVector
dimension
- Variable in class contextFold.features.
DenseFeatureVector
doIter(int, List<RNA>, int, int)
- Method in class contextFold.learn.
Learn
dot(T)
- Method in interface contextFold.common.
Dotable
Computes the dot-product of two vectors.
dot(AbstractFeatureVector)
- Method in class contextFold.features.
AbstractFeatureVector
dot(AbstractFeatureVector)
- Method in class contextFold.features.
DenseFeatureVector
Dotable
<
T
> - Interface in
contextFold.common
DoublePosContext
- Class in
contextFold.features
DoublePosContext(ContextFeatureExtractor, ContextFeatureExtractor)
- Constructor for class contextFold.features.
DoublePosContext
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