Uses of Class
contextFold.features.ContextFeatureExtractor

Packages that use ContextFeatureExtractor
contextFold.features Contains scoring model's parameterization related functionalities. 
contextFold.models Contains a set of pre-defined (untrained) parameterizations. 
 

Uses of ContextFeatureExtractor in contextFold.features
 

Subclasses of ContextFeatureExtractor in contextFold.features
 class DoublePosContext
           
 class SinglePosContext
           
 

Fields in contextFold.features declared as ContextFeatureExtractor
protected  ContextFeatureExtractor DoublePosContext.firstPosContext
           
protected  ContextFeatureExtractor ContextFeatureExtractor.reversedContext
           
protected  ContextFeatureExtractor DoublePosContext.secondPosContext
           
 

Methods in contextFold.features that return ContextFeatureExtractor
 ContextFeatureExtractor DoublePosContext.getFirstPosContext()
           
 ContextFeatureExtractor ContextFeatureExtractor.getReversedContext()
           
 ContextFeatureExtractor DoublePosContext.getSecondPosContext()
           
 ContextFeatureExtractor SinglePosContext.getSuperContext(ContextFeatureExtractor other)
           
 ContextFeatureExtractor DoublePosContext.getSuperContext(ContextFeatureExtractor other)
           
abstract  ContextFeatureExtractor ContextFeatureExtractor.getSuperContext(ContextFeatureExtractor other)
           
 

Methods in contextFold.features with parameters of type ContextFeatureExtractor
 void FeatureManager.addBaseContext(ContextFeatureExtractor context, java.lang.Boolean isReversed)
          Context adding
 void FeatureManager.addBasepairContext(ContextFeatureExtractor context, java.lang.Boolean isReversed)
           
 boolean ContextFeatureExtractor.contained(ContextFeatureExtractor context)
           
 java.lang.Integer[][] SinglePosContext.getFeaturesMap(ContextFeatureExtractor specificContext)
           
 java.lang.Integer[][] DoublePosContext.getFeaturesMap(ContextFeatureExtractor specificContext)
           
abstract  java.lang.Integer[][] ContextFeatureExtractor.getFeaturesMap(ContextFeatureExtractor other)
           
 ContextFeatureExtractor SinglePosContext.getSuperContext(ContextFeatureExtractor other)
           
 ContextFeatureExtractor DoublePosContext.getSuperContext(ContextFeatureExtractor other)
           
abstract  ContextFeatureExtractor ContextFeatureExtractor.getSuperContext(ContextFeatureExtractor other)
           
 

Constructors in contextFold.features with parameters of type ContextFeatureExtractor
DoublePosContext(ContextFeatureExtractor firstPosContext, ContextFeatureExtractor secondPosContext)
           
 

Uses of ContextFeatureExtractor in contextFold.models
 

Methods in contextFold.models with parameters of type ContextFeatureExtractor
protected  java.util.Collection<FeatureTemplate> FeatureSetter.addTemplates(java.lang.String templatePrefix, ContextFeatureExtractor[] contexts, int... types)