A B C D E F G H I J L M N O P R S T U V W X

R

random - Static variable in class contextFold.common.Env
 
randomRNA(int) - Static method in class contextFold.rna.RNA
 
randomRNAString(int) - Static method in class contextFold.rna.RNA
 
RandomSplit - Class in contextFold.rna
 
RandomSplit() - Constructor for class contextFold.rna.RandomSplit
 
readList(CharSequence) - Method in class contextFold.rna.OneLineReader
 
readList(CharSequence) - Method in class contextFold.rna.RNAListReader
 
readList(File) - Method in class contextFold.rna.RNAListReader
 
readList(CharSequence) - Method in class contextFold.rna.RNAStrandReader
 
REDUCED - Static variable in class contextFold.features.WordFeatureCalculator
 
REDUCED_ALPHABET - Static variable in class contextFold.features.WordFeatureCalculator
 
removeArg(String, List<String>) - Static method in class contextFold.common.CmdArgumentsHandler
 
resetCounts() - Method in class contextFold.rnaFolding.Folder
 
reversedContext - Variable in class contextFold.features.ContextFeatureExtractor
 
RNA - Class in contextFold.rna
 
RNA(String, String) - Constructor for class contextFold.rna.RNA
 
RNA(String) - Constructor for class contextFold.rna.RNA
 
RNA(byte[], String) - Constructor for class contextFold.rna.RNA
 
RNA_Filter - Class in contextFold.rna
 
RNA_Filter() - Constructor for class contextFold.rna.RNA_Filter
 
RNAItemPattern - Static variable in class contextFold.rna.OneLineReader
 
RNAItemRegexp - Static variable in class contextFold.rna.OneLineReader
 
RNALine_Regexp - Static variable in class contextFold.rna.OneLineReader
 
RNAListReader - Class in contextFold.rna
 
RNAListReader() - Constructor for class contextFold.rna.RNAListReader
 
RNAListStatistics(List<RNA>) - Static method in class contextFold.rna.RNA
 
RNAStrandReader - Class in contextFold.rna
 
RNAStrandReader() - Constructor for class contextFold.rna.RNAStrandReader
 
RNAStrPattern - Static variable in class contextFold.rna.RNA
 
RNAWriter - Class in contextFold.rna
 
RNAWriter(File) - Constructor for class contextFold.rna.RNAWriter
 
RNAWriter(PrintStream) - Constructor for class contextFold.rna.RNAWriter
 
ROUND - Static variable in class contextFold.rna.RNA
 

A B C D E F G H I J L M N O P R S T U V W X