A B C D E F G H I J L M N O P R S T U V W X

B

BASE_TYPES_NUM - Variable in class contextFold.rnaFolding.StructureRecognizerImpl
 
Baseline - Class in contextFold.models
 
Baseline() - Constructor for class contextFold.models.Baseline
 
BEST - Static variable in class contextFold.rnaFolding.Traceback
 
bindElementTypeToFeatureTemplate(int, Boolean, Collection<FeatureTemplate>) - Method in class contextFold.features.FeatureManager
 
bindElementTypeToFeatureTemplates(int, Collection<FeatureTemplate>...) - Method in class contextFold.features.FeatureManager
Feature-templates binding
bindElementTypeToFeatureTemplates(int, Boolean, Collection<FeatureTemplate>...) - Method in class contextFold.features.FeatureManager
 
bindFeatures() - Method in class contextFold.models.Baseline
 
bindFeatures() - Method in class contextFold.models.FeatureSetter
 
bindFeatures() - Method in class contextFold.models.StHighCoHigh
 
bindFeatures() - Method in class contextFold.models.StHighCoMed
 
bindFeatures() - Method in class contextFold.models.StMedCoHigh
 
bindFeatures() - Method in class contextFold.models.StMedCoMed
 
bindFeatureTemplateToElementTypes(Collection<FeatureTemplate>, int...) - Method in class contextFold.features.FeatureManager
 
bindFeatureTemplateToElementTypes(Collection<FeatureTemplate>, Boolean, int...) - Method in class contextFold.features.FeatureManager
 
bindHpTypesToTemplates(Collection<FeatureTemplate>) - Method in class contextFold.models.FeatureSetter
 
bindIlTypesToTemplates(Collection<FeatureTemplate>) - Method in class contextFold.models.FeatureSetter
 
bindTemplates(Collection<FeatureTemplate>, int...) - Method in class contextFold.models.FeatureSetter
 
bindTypeToLengthCalculator(int, ElementValueCalculator) - Method in class contextFold.features.LogLengthValueFeature
 
BinnedLengthFeatureExtractor - Class in contextFold.features
 
BinnedLengthFeatureExtractor(int, int, boolean) - Constructor for class contextFold.features.BinnedLengthFeatureExtractor
 
boolValue(String) - Method in class contextFold.common.CmdArgumentsHandler
 
byteToStr(byte[]) - Static method in class contextFold.rna.RNA
 

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