Packages

aligner
meshi.applications.corpus
meshi.applications.hubbard
meshi.applications.prediction
meshi.applications.prediction.beautify
meshi.applications.prediction.beautify.unWarpEnergy
meshi.applications.prediction.beautify.warpEnergy
meshi.applications.prediction.homology
meshi.applications.prediction.homology.gui
meshi.energy	energy - overview
meshi.energy.hydrogenBond
meshi.energy.hydrogenBondsAngle
meshi.energy.hydrogenBondsPairs
meshi.energy.linearRG
meshi.energy.pairwiseNonBondedTerms
meshi.energy.pairwiseNonBondedTerms.atomicPairwisePMFSumma
meshi.energy.pairwiseNonBondedTerms.CoulombElectrostatics
meshi.energy.pairwiseNonBondedTerms.evRot1BB
meshi.energy.pairwiseNonBondedTerms.excludedVol
meshi.energy.pairwiseNonBondedTerms.ExcludedVol
meshi.energy.pairwiseNonBondedTerms.excludedVolOLD
meshi.energy.pairwiseNonBondedTerms.finiteExcludedVol
meshi.energy.pairwiseNonBondedTerms.LennardJones
meshi.energy.RG
meshi.energy.sideChainModelingSolvate
meshi.energy.simpleEnergyTerms
meshi.energy.simpleEnergyTerms.alphaAngle
meshi.energy.simpleEnergyTerms.alphaTorsion
meshi.energy.simpleEnergyTerms.angle	Angle energy term.
meshi.energy.simpleEnergyTerms.bond	Bond energy term.
meshi.energy.simpleEnergyTerms.compositeTorsions	Estimates probable backbone and sidechain torsion angles using statistical approximations.
meshi.energy.simpleEnergyTerms.compositeTorsions.compositePropensity
meshi.energy.simpleEnergyTerms.compositeTorsions.compositePropensity2DwithPP
meshi.energy.simpleEnergyTerms.compositeTorsions.ramachandran
meshi.energy.simpleEnergyTerms.compositeTorsions.ramachandranSidechain
meshi.energy.simpleEnergyTerms.compositeTorsions.smoothRotamerLibrary
meshi.energy.simpleEnergyTerms.inflate
meshi.energy.simpleEnergyTerms.inflate.simpleInflate
meshi.energy.simpleEnergyTerms.outOfPlane	Out of plane energy term.
meshi.energy.simpleEnergyTerms.plane	Plane energy term.
meshi.energy.simpleEnergyTerms.tether
meshi.energy.solvate
meshi.energy.solvate.hydrogenBonds
meshi.energy.solvateRot1
meshi.energy.templateEnergy
meshi.geometry	Atom distances, angles and torsion angles.
meshi.geometry.fragments
meshi.geometry.putH
meshi.geometry.rotamers
meshi.molecularElements	Where all the basic structural elements of molecules are found.
meshi.molecularElements.allAtoms
meshi.molecularElements.atoms
meshi.molecularElements.ca
meshi.molecularElements.extendedAtoms
meshi.optimizers	Local minimizers as well as global optimization tools.
meshi.parameters
meshi.PDB	Tools for reading and writing PDB formatted files.
meshi.sequences	Sequence manipulation tools.
meshi.sequences.aligner
meshi.symmetryComplex.energy
meshi.symmetryComplex.energy.cylinder
meshi.symmetryComplex.energy.edmEnergy
meshi.symmetryComplex.geometryImage
meshi.symmetryComplex.molecularImageElements
meshi.symmetryComplex.proteinsGJ
meshi.symmetryComplex.topologyMap
meshi.symmetryComplex.transformations
meshi.symmetryComplex.utils
meshi.util	A collection of useful tools.
meshi.util.alignmentTools
meshi.util.dssp
meshi.util.file
meshi.util.filters
meshi.util.formats	Text formatting tools.
meshi.util.histogram
meshi.util.mathTools
meshi.util.mathTools.Jama
meshi.util.overlap
meshi.util.rotamericTools
meshi.util.string