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See:
Description
| Interface Summary | |
|---|---|
| Attributable | |
| Classes | |
| CommandListGenerator | |
| ExceptionHandler | |
| KeyWords | |
| Logger | |
| MeshiAttribute | |
| Updateable | |
| Verbose | |
| Class Summary | |
|---|---|
| AttributesRack | |
| Command | |
| CommandList | Command File Parser. |
| CommandsException | |
| DoNothingExceptionHandler | |
| GDTcalculator | |
| Key | Key is a semantic sugar for a String that is used as a key to the ComandList class. |
| MeshiProgram | The (suggested) superclass of programs using the meshi package. |
| MeshiProgram.GlobalElement | An element of the keyword-value table. |
| MeshiProgram.GlobalElementList | A keyword-value table |
| Pair | |
| ResidueNameConvertor | Converts Residue names from three letter to one letter format. |
| RgCalculator | |
| Rms | A (hopefully) comfortable handle to the complexity of the Kabsch structural overlap algorithm[1,2]. |
| Scmod | eThis class perform conccurent sidechain modeling as describe in Kalisman and Keasar (2006). |
| Terminator | |
| Utils | Where we store useful static methods that do not make sense anywhere else. |
| Utils.DefaultExceptionHandler | |
| Utils.DoNothingExceptionHandler | |
| Exception Summary | |
|---|---|
| MeshiException | |
| MeshiInitException | |
| UpdateableException | |
A collection of useful tools. The classes here are not necessarily related to molecules.
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