meshi.util.dssp
Class DSSP

java.lang.Object
  meshi.util.dssp.DSSP

public class DSSP
extends java.lang.Object

Field Summary

private char[]	aa
private double	antyparallelPrecentage
protected java.lang.String	fileName
private double[]	fullSol
private double	hbPrecentage
private double	parallelPrecentage
private int[]	resNum
private double[]	solvACC
private char[]	ss

Constructor Summary

DSSP(java.lang.String dsspFileName)

Method Summary

char	AAofRes(int res)
double	ACCofRes(int res)
java.lang.String	getAA()
java.lang.String	getACC()
int	getNumberOfBetaResidues()
java.lang.String	getRelativeACC()
java.lang.String	getSSInOneLine()
java.lang.String	getSSInOneLineConventional()
boolean	inList(int res, char[] SSlist)
boolean	notInEdge(int res)
void	printPresentage()
void	printSS()
void	readDSSP()
double	relACCofRes(int res)
SequenceList	sequenceList()
char	SSofRes(int res)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

fileName

protected java.lang.String fileName

aa

private char[] aa

resNum

private int[] resNum

ss

private char[] ss

solvACC

private double[] solvACC

fullSol

private double[] fullSol

hbPrecentage

private double hbPrecentage

parallelPrecentage

private double parallelPrecentage

antyparallelPrecentage

private double antyparallelPrecentage

Constructor Detail

DSSP

public DSSP(java.lang.String dsspFileName)

Method Detail

printPresentage

public void printPresentage()

inList

public boolean inList(int res,
                      char[] SSlist)

notInEdge

public boolean notInEdge(int res)

SSofRes

public char SSofRes(int res)

AAofRes

public char AAofRes(int res)

ACCofRes

public double ACCofRes(int res)

relACCofRes

public double relACCofRes(int res)

getACC

public java.lang.String getACC()

getRelativeACC

public java.lang.String getRelativeACC()

getAA

public java.lang.String getAA()

printSS

public void printSS()

getSSInOneLine

public java.lang.String getSSInOneLine()

getSSInOneLineConventional

public java.lang.String getSSInOneLineConventional()

getNumberOfBetaResidues

public int getNumberOfBetaResidues()

readDSSP

public void readDSSP()

sequenceList

public SequenceList sequenceList()