meshi.symmetryComplex.molecularImageElements
Class ImageChain

java.lang.Object
  java.util.AbstractCollection<E>
      java.util.AbstractList<E>
          java.util.ArrayList<Residue>
              meshi.molecularElements.ResidueList
                  meshi.molecularElements.Chain
                      meshi.symmetryComplex.molecularImageElements.ImageChain

All Implemented Interfaces:

java.io.Serializable, java.lang.Cloneable, java.lang.Iterable<Residue>, java.util.Collection<Residue>, java.util.List<Residue>, java.util.RandomAccess

public class ImageChain
extends Chain

Created by IntelliJ IDEA. User: TM Date: Dec 23, 2008 Time: 11:44:13 AM To change this template use File | Settings | File Templates.

See Also:

Serialized Form

Nested Class Summary

static class

ImageChain.IsImageChain

Nested classes/interfaces inherited from class meshi.molecularElements.ResidueList

ResidueList.NonDummyFilter

Field Summary

private Chain	source
private Transformation	transformation

Fields inherited from class meshi.molecularElements.Chain

GENERIC_CHAIN_NAME, name, protein

Fields inherited from class java.util.AbstractList

modCount

Constructor Summary

ImageChain(Protein protein, Chain source, java.lang.String chainName, Transformation transformation)

Method Summary

Chain	source()
Transformation	transformation()

Methods inherited from class meshi.molecularElements.Chain

assertChain, atoms, filter, firstNonDummyResidue, missingResidues, name, nowhereAtoms, numberOfNonDummyResidues, residue, residueAt, sequence, toString

Methods inherited from class meshi.molecularElements.ResidueList

print, sort

Methods inherited from class java.util.ArrayList

add, add, addAll, addAll, clear, clone, contains, ensureCapacity, get, indexOf, isEmpty, lastIndexOf, remove, remove, removeRange, set, size, toArray, toArray, trimToSize

Methods inherited from class java.util.AbstractList

equals, hashCode, iterator, listIterator, listIterator, subList

Methods inherited from class java.util.AbstractCollection

containsAll, removeAll, retainAll

Methods inherited from class java.lang.Object

finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.util.List

containsAll, equals, hashCode, iterator, listIterator, listIterator, removeAll, retainAll, subList

Field Detail

transformation

private Transformation transformation

source

private Chain source

Constructor Detail

ImageChain

public ImageChain(Protein protein,
                  Chain source,
                  java.lang.String chainName,
                  Transformation transformation)

Method Detail

source

public Chain source()

transformation

public Transformation transformation()