meshi.symmetryComplex.geometryImage
Class MatrixRowNoImageAtoms

java.lang.Object
  meshi.geometry.DistanceList
      meshi.geometry.MatrixRow
          meshi.symmetryComplex.geometryImage.MatrixRowNoImageAtoms

All Implemented Interfaces:

java.lang.Iterable<Distance>

public class MatrixRowNoImageAtoms
extends MatrixRow

Created by IntelliJ IDEA. User: TM Date: Jan 7, 2009 Time: 2:41:02 PM To change this template use File | Settings | File Templates.

Field Summary

private static DistanceMode	mode
private static boolean[]	toNonBonded

Fields inherited from class meshi.geometry.MatrixRow

atom, atom2, atom2number, CAPACITY, distance, lastEmpty, number, rMax2

Fields inherited from class meshi.geometry.DistanceList

capacity, filter, internalArray, size

Constructor Summary

MatrixRowNoImageAtoms(AtomCore atom, MatrixRow[] matrix)

Method Summary

void	addCell(GridCell cell, DistanceList nonBondedList, java.util.ArrayList<DistanceList> energyTermsDistanceLists)
void	update(DistanceList nonBondedList, java.util.ArrayList<DistanceList> energyTermsDistanceLists)

Methods inherited from class meshi.geometry.MatrixRow

search, toString

Methods inherited from class meshi.geometry.DistanceList

add, clear, get, isEmpty, iterator, size, sort, toArray

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

mode

private static DistanceMode mode

toNonBonded

private static boolean[] toNonBonded

Constructor Detail

MatrixRowNoImageAtoms

public MatrixRowNoImageAtoms(AtomCore atom,
                             MatrixRow[] matrix)

Method Detail

update

public void update(DistanceList nonBondedList,
                   java.util.ArrayList<DistanceList> energyTermsDistanceLists)

Overrides:

update in class MatrixRow

addCell

public void addCell(GridCell cell,
                    DistanceList nonBondedList,
                    java.util.ArrayList<DistanceList> energyTermsDistanceLists)

Overrides:

addCell in class MatrixRow