meshi.symmetryComplex.energy
Class SymmetryEnergyElement

java.lang.Object
  meshi.energy.EnergyElement
      meshi.symmetryComplex.energy.SymmetryEnergyElement

public class SymmetryEnergyElement
extends EnergyElement

This energy element always contributes zero to the total energy, but in every iteration it updates image atoms/proteins... TODO

Field Summary

protected SymmetricComplex	symmetricComplex
(package private) double	weight

Fields inherited from class meshi.energy.EnergyElement

atoms, dFormatSrt, dFormatStd, DX, frozen, relativeDiffTolerance, VERY_SMALL, XYZ

Constructor Summary

SymmetryEnergyElement(SymmetricComplex symmetricComplex, double weight)

Method Summary

double	evaluate()
protected void	setAtoms()
java.lang.String	toString()

Methods inherited from class meshi.energy.EnergyElement

atoms, evaluateAtoms, frozen, test, updateFrozen

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

symmetricComplex

protected SymmetricComplex symmetricComplex

weight

double weight

Constructor Detail

SymmetryEnergyElement

public SymmetryEnergyElement(SymmetricComplex symmetricComplex,
                             double weight)

Method Detail

evaluate

public double evaluate()

Specified by:

evaluate in class EnergyElement

setAtoms

protected void setAtoms()

Specified by:

setAtoms in class EnergyElement

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object