meshi.sequences.aligner
Class Identity

java.lang.Object
  meshi.sequences.aligner.Identity

All Implemented Interfaces:

CellScorer

public class Identity
extends java.lang.Object
implements CellScorer

Field Summary

double

gapPenalty

Constructor Summary

Identity(double gapPenalty)

Method Summary

double

getScore(Cell cell)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

gapPenalty

public final double gapPenalty

Constructor Detail

Identity

public Identity(double gapPenalty)

Method Detail

getScore

public double getScore(Cell cell)

Specified by:

getScore in interface CellScorer