meshi.sequences
Class ResidueAlignmentColumn

java.lang.Object
  meshi.sequences.AlignmentColumn
      meshi.sequences.ResidueAlignmentColumn

public class ResidueAlignmentColumn
extends AlignmentColumn

A pair of residues each from a different Protein object and a string indicating which atoms in these residues should be aligned. Represents a column in a sequence alignment (currently no multiple sequences).

Field Summary

Fields inherited from class meshi.sequences.AlignmentColumn

cells

Constructor Summary

protected	ResidueAlignmentColumn(int numberOfRows)
	ResidueAlignmentColumn(ResidueAlignmentCell cell0, ResidueAlignmentCell cell1)
	ResidueAlignmentColumn(Residue residue0, Residue residue1)

Method Summary

Residue	residue0()
Residue	residue1()
java.lang.String	toString()

Methods inherited from class meshi.sequences.AlignmentColumn

add, allGaps, cell, cell0, cell1, hasGap, size

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

ResidueAlignmentColumn

protected ResidueAlignmentColumn(int numberOfRows)

ResidueAlignmentColumn

public ResidueAlignmentColumn(Residue residue0,
                              Residue residue1)

ResidueAlignmentColumn

public ResidueAlignmentColumn(ResidueAlignmentCell cell0,
                              ResidueAlignmentCell cell1)

Method Detail

toString

public java.lang.String toString()

Overrides:

toString in class AlignmentColumn

residue0

public Residue residue0()

residue1

public Residue residue1()