meshi.sequences
Class AlignmentCell

java.lang.Object
  meshi.sequences.AlignmentCell

All Implemented Interfaces:

Attributable

Direct Known Subclasses:

AtomAlignmentCell, ResidueAlignmentCell, SequenceAlignmentCell

public abstract class AlignmentCell
extends java.lang.Object
implements Attributable

A container for a protein element and its number.

Field Summary

private AttributesRack	attributes
java.lang.String	comment
int	number
java.lang.Object	obj

Constructor Summary

AlignmentCell(java.lang.Object obj, int number)

AlignmentCell(java.lang.Object obj, int number, java.lang.String comment)

Method Summary

void	addAttribute(MeshiAttribute attribute)
AlignmentColumn	column()
abstract boolean	gap()
MeshiAttribute	getAttribute(int key)
int	number()
java.lang.Object	object()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

number

public final int number

obj

public final java.lang.Object obj

comment

public final java.lang.String comment

attributes

private AttributesRack attributes

Constructor Detail

AlignmentCell

public AlignmentCell(java.lang.Object obj,
                     int number)

AlignmentCell

public AlignmentCell(java.lang.Object obj,
                     int number,
                     java.lang.String comment)

Method Detail

object

public java.lang.Object object()

number

public int number()

gap

public abstract boolean gap()

column

public AlignmentColumn column()

addAttribute

public void addAttribute(MeshiAttribute attribute)

Specified by:

addAttribute in interface Attributable

getAttribute

public MeshiAttribute getAttribute(int key)

Specified by:

getAttribute in interface Attributable