meshi.parameters
Enum SecondaryStructure

java.lang.Object
  java.lang.Enum<SecondaryStructure>
      meshi.parameters.SecondaryStructure

All Implemented Interfaces:

java.io.Serializable, java.lang.Comparable<SecondaryStructure>, MeshiAttribute

public enum SecondaryStructure
extends java.lang.Enum<SecondaryStructure>
implements MeshiAttribute

Enum Constant Summary

ALL

COIL

HELIX

HELIX_OR_COIL

SHEET

SHEET_OR_COIL

UNK

Field Summary

private java.lang.String

nameOneLetter

Fields inherited from interface meshi.util.MeshiAttribute

BEAUTIFY_ATTRIBUTE, CN_ATTRIBUTE, DISTANCE_FROM_CATALYTIC_ATTRIBUTE, EXCLUDED_VOLUME_ELEMENT_ATTRIBUTE, GAUSSIAN_ALPHA, GAUSSIAN_ATTRIBUTE, HYDROGEN_BONDS_ATTRIBUTE, LENNARD_JONES_ELEMENT_ATTRIBUTE, LOOP_RESIDUE, ORIGINAL_ATOM, RESIDUE_ATTRIBUTE, RESIDUE_TORSIONS_ATTRIBUTE, SECONDARY_STRUCTURE_ATTRIBUTE, SEQUENCE_ALIGNMENT_COLUMN_ATTRIBUTE, SIDE_CHAIN_SOLVATE_ALL_ATOM_ATTRIBUTE, SOLVATE_ALL_ATOM_ATTRIBUTE, SOLVATE_CA_ATTRIBUTE, SOLVATE_ROT1_ATTRIBUTE, SUMMA_ATTRIBUTE

Method Summary

static boolean	isSecondaryStructure(char c)
int	key()
static SecondaryStructure	secondaryStructure(char c)
static SecondaryStructure	valueOf(java.lang.String name) Returns the enum constant of this type with the specified name.
static SecondaryStructure[]	values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

HELIX

public static final SecondaryStructure HELIX

SHEET

public static final SecondaryStructure SHEET

COIL

public static final SecondaryStructure COIL

HELIX_OR_COIL

public static final SecondaryStructure HELIX_OR_COIL

SHEET_OR_COIL

public static final SecondaryStructure SHEET_OR_COIL

ALL

public static final SecondaryStructure ALL

UNK

public static final SecondaryStructure UNK

Field Detail

nameOneLetter

private final java.lang.String nameOneLetter

Method Detail

values

public static SecondaryStructure[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (SecondaryStructure c : SecondaryStructure.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static SecondaryStructure valueOf(java.lang.String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

java.lang.IllegalArgumentException - if this enum type has no constant with the specified name

java.lang.NullPointerException - if the argument is null

secondaryStructure

public static SecondaryStructure secondaryStructure(char c)

isSecondaryStructure

public static boolean isSecondaryStructure(char c)

key

public int key()

Specified by:

key in interface MeshiAttribute