meshi.parameters
Interface MeshiPotential
- All Known Implementing Classes:
- AbInitio, Ala, AlphaAngleCreator, AlphaAngleEnergyElement, AlphaTorsionCreator, AlphaTorsionEnergyElement, AlphaTorsionParametersList, AngleCreator, Arg, Asn, Asp, AtomicPairwisePMFSummaCreator, AtomicPairwisePMFSummaParameters, BackboneResidue, Beautify, BondCreator, CaResidue, CompositePropensity2DCreator, CompositePropensityCreator, CooperativeAtomicPairwisePMFSummaCreator, CooperativeAtomicPairwisePMFSummaParameters, CooperativePerAtomSummaCreator, CooperativePerAtomSummaParameters, CooperativePropensityCreator, CooperativePropensityParameters, CooperativeRamachandranCreator, CooperativeRamachandranParameters, CooperativeZParameters, CooperativeZPropensityCreator, CooperativeZPropensityParameters, CooperativeZRamachandranCreator, CooperativeZRamachandranParameters, CooperativeZSummaCreator, Corpus, CoulombElectrostaticCreator, CylinderCreator, Cys, EDMEnergyCreator, EnergyCreator, EVRot1BBCreator, ExcludedVolCreator, ExcludedVolCreator, ExcludedVolCreatorOLD, FiniteExcludedVolCreator, Gln, Glu, Gly, HbondsPunishHOCAngleCreator, HBondsPunishOHNAngleCreator, HeliumClusterMinimization.HeliumLennardJonesCreator, His, HydrogenBondsCreator, HydrogenBondsPairsCreator, Ile, ImageResidue, LennardJonesCreator, LennardJonesCreatorCa, Leu, LinearRgCreator, LocalFragmentLib, Lys, Met, OutOfPlaneCreator, Pdb2Fasta.MyResidue, Phe, PlaneCreator, Pro, RamachandranCreator, RamachandranSidechainEnergyCreator, Residue, ResidueExtendedAtoms, RgCreator, Scmod, Ser, SideChainSolvateCreator, SimpleEnergyCreator, SimpleInflateCreator, SmoothRotamerLibraryEnergyCreator, SolvateCreatorHBforMinimization, SolvateCreatorLongHB, SolvateCreatorRegularHB, SolvateRot1Creator, SymmetryCreator, TemplateEnergyCreator, TetherCreator, Thr, Trp, Tyr, UnWarpEnergyCreator, Utils, Val, WarpEnergyCreator
public interface MeshiPotential
HYDROGEN_BONDS_PAIRS_PARAMETERS_SURFACE
static final java.lang.String HYDROGEN_BONDS_PAIRS_PARAMETERS_SURFACE
- See Also:
- Constant Field Values
HYDROGEN_BONDS_PAIRS_BETA_PARAMETERS
static final java.lang.String HYDROGEN_BONDS_PAIRS_BETA_PARAMETERS
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- Constant Field Values
HYDROGEN_BONDS_PAIRS_HELIX_PARAMETERS
static final java.lang.String HYDROGEN_BONDS_PAIRS_HELIX_PARAMETERS
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- Constant Field Values
BOND_PARAMETERS
static final java.lang.String BOND_PARAMETERS
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- Constant Field Values
ANGLE_PARAMETERS
static final java.lang.String ANGLE_PARAMETERS
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- Constant Field Values
PLANE_PARAMETERS
static final java.lang.String PLANE_PARAMETERS
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- Constant Field Values
OUT_OF_PLANE_PARAMETERS
static final java.lang.String OUT_OF_PLANE_PARAMETERS
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- Constant Field Values
LENNARD_JONES_PARAMETERS
static final java.lang.String LENNARD_JONES_PARAMETERS
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- Constant Field Values
LENNARD_JONES_PARAMETERS_CA
static final java.lang.String LENNARD_JONES_PARAMETERS_CA
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- Constant Field Values
LENNARD_JONES_PARAMETERS_BACKBONE
static final java.lang.String LENNARD_JONES_PARAMETERS_BACKBONE
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- Constant Field Values
CONTACTS_PARAMETERS
static final java.lang.String CONTACTS_PARAMETERS
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- Constant Field Values
LJ_ENVIRONMENT_PARAMETERS
static final java.lang.String LJ_ENVIRONMENT_PARAMETERS
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- Constant Field Values
LJ_ENVIRONMENT_PARAMETERS_CA
static final java.lang.String LJ_ENVIRONMENT_PARAMETERS_CA
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- Constant Field Values
LJ_ENVIRONMENT_PARAMETERS_BACKBONE
static final java.lang.String LJ_ENVIRONMENT_PARAMETERS_BACKBONE
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- Constant Field Values
CONTACTS_ENVIRONMENT_PARAMETERS
static final java.lang.String CONTACTS_ENVIRONMENT_PARAMETERS
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- Constant Field Values
EXCLUDED_VOL_PARAMETERS
static final java.lang.String EXCLUDED_VOL_PARAMETERS
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- Constant Field Values
ATOMIC_PAIRWISE_PMF_SUMMA_PARAMETERS
static final java.lang.String ATOMIC_PAIRWISE_PMF_SUMMA_PARAMETERS
- See Also:
- Constant Field Values
COOPERATIVE_ATOMIC_PAIRWISE_PMF_SUMMA_PARAMETERS
static final java.lang.String COOPERATIVE_ATOMIC_PAIRWISE_PMF_SUMMA_PARAMETERS
- See Also:
- Constant Field Values
COMPOSITE_TORSIONS_PARAMETERS
static final java.lang.String COMPOSITE_TORSIONS_PARAMETERS
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- Constant Field Values
COMPOSITE_PROPENSITY_PARAMETERS
static final java.lang.String COMPOSITE_PROPENSITY_PARAMETERS
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- Constant Field Values
COMPOSITE_PROPENSITY_2D_PARAMETERS
static final java.lang.String COMPOSITE_PROPENSITY_2D_PARAMETERS
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- Constant Field Values
ELECTROSTATICS_PARAMETERS
static final java.lang.String ELECTROSTATICS_PARAMETERS
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- Constant Field Values
TWO_TORSIONS_PARAMETERS
static final java.lang.String[] TWO_TORSIONS_PARAMETERS
COMPOSITE_PROPENSITY_2D_WITH_PP_PARAMETERS
static final java.lang.String COMPOSITE_PROPENSITY_2D_WITH_PP_PARAMETERS
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- Constant Field Values
COOPERATIVE_PROPENSITY_PARAMETERS
static final java.lang.String COOPERATIVE_PROPENSITY_PARAMETERS
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- Constant Field Values
COOPERATIVE_RAMACHANDRAN_PARAMETERS
static final java.lang.String COOPERATIVE_RAMACHANDRAN_PARAMETERS
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- Constant Field Values
FLAT_RAMACH_PARAMETERS
static final java.lang.String[] FLAT_RAMACH_PARAMETERS
PROPENSITY_TORSION_PARAMETERS
static final java.lang.String[] PROPENSITY_TORSION_PARAMETERS
PROPENSITY_ANGLE_PARAMETERS
static final java.lang.String[] PROPENSITY_ANGLE_PARAMETERS
ONE_ANGLE_PARAMETERS
static final java.lang.String[] ONE_ANGLE_PARAMETERS
TWO_ANGLES_PARAMETERS
static final java.lang.String[] TWO_ANGLES_PARAMETERS
ALPHA_ANGLE_PARAMETERS
static final java.lang.String ALPHA_ANGLE_PARAMETERS
- See Also:
- Constant Field Values
ALPHA_TORSION_PARAMETERS
static final java.lang.String ALPHA_TORSION_PARAMETERS
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- Constant Field Values
HELIX
static final java.lang.String HELIX
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- Constant Field Values
SHEET
static final java.lang.String SHEET
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- Constant Field Values
COIL
static final java.lang.String COIL
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- Constant Field Values
HELIX_OR_COIL
static final java.lang.String HELIX_OR_COIL
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- Constant Field Values
SHEET_OR_COIL
static final java.lang.String SHEET_OR_COIL
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- Constant Field Values
ACCESSIBLE
static final java.lang.String ACCESSIBLE
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- Constant Field Values
BURIED
static final java.lang.String BURIED
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- Constant Field Values
SOLVATE_PARAMETERS
static final java.lang.String[] SOLVATE_PARAMETERS
SOLVATE_LONG_HB_PARAMETERS
static final java.lang.String[] SOLVATE_LONG_HB_PARAMETERS
SOLVATE_MINIMIZE_HB_PARAMETERS
static final java.lang.String[] SOLVATE_MINIMIZE_HB_PARAMETERS
SOLVATE_NOHB_PARAMETERS
static final java.lang.String[] SOLVATE_NOHB_PARAMETERS
SOLVATE_SC_PARAMETERS
static final java.lang.String[] SOLVATE_SC_PARAMETERS