meshi.molecularElements
Class ChainList

java.lang.Object
  java.util.AbstractCollection<E>
      java.util.AbstractList<E>
          java.util.ArrayList<Chain>
              meshi.molecularElements.ChainList

All Implemented Interfaces:

java.io.Serializable, java.lang.Cloneable, java.lang.Iterable<Chain>, java.util.Collection<Chain>, java.util.List<Chain>, java.util.RandomAccess

public class ChainList
extends java.util.ArrayList<Chain>

A list of residues.

See Also:

Serialized Form

Nested Class Summary

(package private) static class

ChainList.IsChain

Field Summary

Protein

protein

Fields inherited from class java.util.AbstractList

modCount

Constructor Summary

ChainList(AtomList atomList, ResidueCreator creator, Protein protein)

ChainList(Protein protein)
Empty list.

Method Summary

ChainList	filter(Filter chainFilter)
java.lang.String	toString()

Methods inherited from class java.util.ArrayList

add, add, addAll, addAll, clear, clone, contains, ensureCapacity, get, indexOf, isEmpty, lastIndexOf, remove, remove, removeRange, set, size, toArray, toArray, trimToSize

Methods inherited from class java.util.AbstractList

equals, hashCode, iterator, listIterator, listIterator, subList

Methods inherited from class java.util.AbstractCollection

containsAll, removeAll, retainAll

Methods inherited from class java.lang.Object

finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.util.List

containsAll, equals, hashCode, iterator, listIterator, listIterator, removeAll, retainAll, subList

Field Detail

protein

public final Protein protein

Constructor Detail

ChainList

public ChainList(Protein protein)

Empty list.

ChainList

public ChainList(AtomList atomList,
                 ResidueCreator creator,
                 Protein protein)

Method Detail

filter

public ChainList filter(Filter chainFilter)

toString

public java.lang.String toString()

Overrides:

toString in class java.util.AbstractCollection<Chain>