meshi.geometry
Class MatrixRowCaOnly

java.lang.Object
  meshi.geometry.DistanceList
      meshi.geometry.MatrixRow
          meshi.geometry.MatrixRowCaOnly

All Implemented Interfaces:

java.lang.Iterable<Distance>

public class MatrixRowCaOnly
extends MatrixRow

Field Summary

private int	atomNumber
private static MolecularSystem	molecularSystem

Fields inherited from class meshi.geometry.MatrixRow

atom, atom2, atom2number, CAPACITY, distance, lastEmpty, matrix, number, rMax2, rMaxPlusBuffer2, searchStart

Fields inherited from class meshi.geometry.DistanceList

capacity, filter, internalArray, size

Constructor Summary

MatrixRowCaOnly(AtomCore atom, MatrixRow[] matrix, MolecularSystem molecularSystem)

Method Summary

java.lang.String	toString()
void	update(DistanceList nonBondedList, java.util.ArrayList<DistanceList> energyTermsDistanceLists, int counter)

Methods inherited from class meshi.geometry.MatrixRow

addCell, search, update

Methods inherited from class meshi.geometry.DistanceList

add, clear, get, isEmpty, iterator, size, sort, toArray

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

molecularSystem

private static MolecularSystem molecularSystem

atomNumber

private int atomNumber

Constructor Detail

MatrixRowCaOnly

public MatrixRowCaOnly(AtomCore atom,
                       MatrixRow[] matrix,
                       MolecularSystem molecularSystem)

Method Detail

update

public void update(DistanceList nonBondedList,
                   java.util.ArrayList<DistanceList> energyTermsDistanceLists,
                   int counter)

toString

public java.lang.String toString()

Overrides:

toString in class MatrixRow