meshi.geometry
Class Coordinates

java.lang.Object
  meshi.geometry.Coordinates

Direct Known Subclasses:

FrozenCoordinates

public class Coordinates
extends java.lang.Object

Field Summary

private boolean	nowhere
static double	NOWHERE_CONST
private boolean	random
protected double[]	x
protected double[]	y
protected double[]	z

Constructor Summary

Coordinates()

Coordinates(Atom atom)

Coordinates(Coordinates coordinates)

Coordinates(Coordinates coordinates, double radius)

Coordinates(double x, double y, double z)

Method Summary

void	addToFx(double addMe)
void	addToFy(double addMe)
void	addToFz(double addMe)
void	addToX(double addMe)
void	addToY(double addMe)
void	addToZ(double addMe)
double	distanceFrom(Coordinates other)
boolean	equals(java.lang.Object obj)
double	fx()
double	fy()
double	fz()
boolean	nowhere()
boolean	random()
void	reset()
void	resetForces()
void	set(Coordinates other)
void	set(Coordinates other, double radius)
void	setFx(double fx)
void	setFy(double fy)
void	setFz(double fz)
void	setXYZ(double x, double y, double z)
void	somewhere()
java.lang.String	toString()
double	x()
double[]	X()
double	y()
double[]	Y()
double	z()
double[]	Z()

Methods inherited from class java.lang.Object

clone, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

NOWHERE_CONST

public static double NOWHERE_CONST

x

protected double[] x

y

protected double[] y

z

protected double[] z

random

private boolean random

nowhere

private boolean nowhere

Constructor Detail

Coordinates

public Coordinates()

Coordinates

public Coordinates(Atom atom)

Coordinates

public Coordinates(double x,
                   double y,
                   double z)

Coordinates

public Coordinates(Coordinates coordinates)

Coordinates

public Coordinates(Coordinates coordinates,
                   double radius)

Method Detail

random

public boolean random()

nowhere

public final boolean nowhere()

somewhere

public void somewhere()

reset

public void reset()

x

public final double x()

y

public final double y()

z

public final double z()

fx

public final double fx()

fy

public final double fy()

fz

public final double fz()

setXYZ

public void setXYZ(double x,
                   double y,
                   double z)

set

public void set(Coordinates other)

set

public void set(Coordinates other,
                double radius)

setFx

public void setFx(double fx)

setFy

public void setFy(double fy)

setFz

public void setFz(double fz)

addToX

public void addToX(double addMe)

addToY

public void addToY(double addMe)

addToZ

public void addToZ(double addMe)

addToFx

public final void addToFx(double addMe)

addToFy

public final void addToFy(double addMe)

addToFz

public final void addToFz(double addMe)

resetForces

public void resetForces()

X

public final double[] X()

Y

public final double[] Y()

Z

public final double[] Z()

equals

public boolean equals(java.lang.Object obj)

Overrides:

equals in class java.lang.Object

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object

distanceFrom

public final double distanceFrom(Coordinates other)