meshi.energy.solvate
Class SolvateDistanceAttributeWithNonPolar

java.lang.Object
  meshi.energy.solvate.SolvateDistanceAttribute
      meshi.energy.solvate.SolvateDistanceAttributeWithNonPolar

All Implemented Interfaces:

MeshiAttribute

public class SolvateDistanceAttributeWithNonPolar
extends SolvateDistanceAttribute

Field Summary

Distance	distance
double	dsigmCa1dx1
double	dsigmCa1dy1
double	dsigmCa1dz1
double	dsigmCa2dx1
double	dsigmCa2dy1
double	dsigmCa2dz1
SigmaParameters	sigmaParameters_12
SigmaParameters	sigmaParameters_21
double	sigmCa1
double	sigmCa2

Fields inherited from interface meshi.util.MeshiAttribute

BEAUTIFY_ATTRIBUTE, CN_ATTRIBUTE, DISTANCE_FROM_CATALYTIC_ATTRIBUTE, EXCLUDED_VOLUME_ELEMENT_ATTRIBUTE, GAUSSIAN_ALPHA, GAUSSIAN_ATTRIBUTE, HYDROGEN_BONDS_ATTRIBUTE, LENNARD_JONES_ELEMENT_ATTRIBUTE, LOOP_RESIDUE, ORIGINAL_ATOM, RESIDUE_ATTRIBUTE, RESIDUE_TORSIONS_ATTRIBUTE, SECONDARY_STRUCTURE_ATTRIBUTE, SEQUENCE_ALIGNMENT_COLUMN_ATTRIBUTE, SIDE_CHAIN_SOLVATE_ALL_ATOM_ATTRIBUTE, SOLVATE_ALL_ATOM_ATTRIBUTE, SOLVATE_CA_ATTRIBUTE, SOLVATE_ROT1_ATTRIBUTE, SUMMA_ATTRIBUTE

Constructor Summary

SolvateDistanceAttributeWithNonPolar(Distance dis, SigmaParameters sigmaParameters_12, SigmaParameters sigmaParameters_21)

Method Summary

void	resetSigmVals()
SolvateDistanceType	type()
void	update()

Methods inherited from class meshi.energy.solvate.SolvateDistanceAttribute

key

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

distance

public final Distance distance

sigmaParameters_12

public final SigmaParameters sigmaParameters_12

sigmaParameters_21

public final SigmaParameters sigmaParameters_21

sigmCa1

public double sigmCa1

dsigmCa1dx1

public double dsigmCa1dx1

dsigmCa1dy1

public double dsigmCa1dy1

dsigmCa1dz1

public double dsigmCa1dz1

sigmCa2

public double sigmCa2

dsigmCa2dx1

public double dsigmCa2dx1

dsigmCa2dy1

public double dsigmCa2dy1

dsigmCa2dz1

public double dsigmCa2dz1

Constructor Detail

SolvateDistanceAttributeWithNonPolar

public SolvateDistanceAttributeWithNonPolar(Distance dis,
                                            SigmaParameters sigmaParameters_12,
                                            SigmaParameters sigmaParameters_21)

Method Detail

type

public final SolvateDistanceType type()

Specified by:

type in class SolvateDistanceAttribute

update

public final void update()

resetSigmVals

public final void resetSigmVals()