meshi.energy.solvate
Class SolvateDistanceAttributeBetweenPolars

java.lang.Object
  meshi.energy.solvate.SolvateDistanceAttribute
      meshi.energy.solvate.SolvateDistanceAttributeBetweenPolars

All Implemented Interfaces:

MeshiAttribute

public class SolvateDistanceAttributeBetweenPolars
extends SolvateDistanceAttribute

Field Summary

int	atom1number
int	atom2number
double	saltBridgeFactorA1
double	saltBridgeFactorA2
double	saltBridgeFactorForHBenergyA1
double	saltBridgeFactorForHBenergyA2
double	sigmHB
AbstractHydrogenBondList	solvateHB

Fields inherited from interface meshi.util.MeshiAttribute

BEAUTIFY_ATTRIBUTE, CN_ATTRIBUTE, DISTANCE_FROM_CATALYTIC_ATTRIBUTE, EXCLUDED_VOLUME_ELEMENT_ATTRIBUTE, GAUSSIAN_ALPHA, GAUSSIAN_ATTRIBUTE, HYDROGEN_BONDS_ATTRIBUTE, LENNARD_JONES_ELEMENT_ATTRIBUTE, LOOP_RESIDUE, ORIGINAL_ATOM, RESIDUE_ATTRIBUTE, RESIDUE_TORSIONS_ATTRIBUTE, SECONDARY_STRUCTURE_ATTRIBUTE, SEQUENCE_ALIGNMENT_COLUMN_ATTRIBUTE, SIDE_CHAIN_SOLVATE_ALL_ATOM_ATTRIBUTE, SOLVATE_ALL_ATOM_ATTRIBUTE, SOLVATE_CA_ATTRIBUTE, SOLVATE_ROT1_ATTRIBUTE, SUMMA_ATTRIBUTE

Constructor Summary

SolvateDistanceAttributeBetweenPolars(Distance distance, AbstractHydrogenBondList solvateHB, double saltBridgeFactorForHBenergyA1, double saltBridgeFactorForHBenergyA2, double saltBridgeFactorA1, double saltBridgeFactorA2)

Method Summary

SolvateDistanceType	type()
void	update()

Methods inherited from class meshi.energy.solvate.SolvateDistanceAttribute

key

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

sigmHB

public double sigmHB

saltBridgeFactorA1

public final double saltBridgeFactorA1

saltBridgeFactorA2

public final double saltBridgeFactorA2

saltBridgeFactorForHBenergyA1

public final double saltBridgeFactorForHBenergyA1

saltBridgeFactorForHBenergyA2

public final double saltBridgeFactorForHBenergyA2

atom1number

public final int atom1number

atom2number

public final int atom2number

solvateHB

public AbstractHydrogenBondList solvateHB

Constructor Detail

SolvateDistanceAttributeBetweenPolars

public SolvateDistanceAttributeBetweenPolars(Distance distance,
                                             AbstractHydrogenBondList solvateHB,
                                             double saltBridgeFactorForHBenergyA1,
                                             double saltBridgeFactorForHBenergyA2,
                                             double saltBridgeFactorA1,
                                             double saltBridgeFactorA2)

Method Detail

update

public final void update()

type

public final SolvateDistanceType type()

Specified by:

type in class SolvateDistanceAttribute