meshi.energy.simpleEnergyTerms.tether
Class TetherEnergy

java.lang.Object
  meshi.energy.AbstractEnergy
      meshi.energy.simpleEnergyTerms.SimpleEnergyTerm
          meshi.energy.simpleEnergyTerms.tether.TetherEnergy

All Implemented Interfaces:

Attributable, Updateable

public class TetherEnergy
extends SimpleEnergyTerm

Nested Class Summary

Nested classes/interfaces inherited from class meshi.energy.AbstractEnergy

AbstractEnergy.UpdateableList

Field Summary

private static int	counter
protected double[][]	initialLocationsMatrix The constructor associates any bond with its parameters.

Fields inherited from class meshi.energy.simpleEnergyTerms.SimpleEnergyTerm

elementsList, parametersList

Fields inherited from class meshi.energy.AbstractEnergy

comment, filter, INFINITY, NaN, on, updateableResources, weight

Constructor Summary

TetherEnergy()

TetherEnergy(AtomList atomList, double[][] inputMatrix, double weight, java.lang.String comment)

Method Summary

EnergyElement	createElement(java.lang.Object baseElement)
EnergyElement	createElement(java.lang.Object baseElement, Parameters p)
void	update()
void	update(int i) Updates the updatable resources.

Methods inherited from class meshi.energy.simpleEnergyTerms.SimpleEnergyTerm

createElementsList, elementsList, evaluate, evaluateAtoms, test

Methods inherited from class meshi.energy.AbstractEnergy

addAttribute, comment, getAttribute, handleMissingParameters, isOn, off, on, toArray, toArray, toArray, toArray, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

initialLocationsMatrix

protected double[][] initialLocationsMatrix

The constructor associates any bond with its parameters.

counter

private static int counter

Constructor Detail

TetherEnergy

public TetherEnergy()

TetherEnergy

public TetherEnergy(AtomList atomList,
                    double[][] inputMatrix,
                    double weight,
                    java.lang.String comment)

Method Detail

createElement

public EnergyElement createElement(java.lang.Object baseElement)

update

public void update()

update

public void update(int i)

Description copied from class: AbstractEnergy

Updates the updatable resources. For a detailed description of MESHI's treatment of updatable resources see the documentation of TotalEnergy.

Specified by:

update in interface Updateable

Overrides:

update in class AbstractEnergy

createElement

public EnergyElement createElement(java.lang.Object baseElement,
                                   Parameters p)

Specified by:

createElement in class SimpleEnergyTerm