meshi.energy.simpleEnergyTerms.outOfPlane
Class OutOfPlaneEnergy

java.lang.Object
  meshi.energy.AbstractEnergy
      meshi.energy.simpleEnergyTerms.SimpleEnergyTerm
          meshi.energy.simpleEnergyTerms.outOfPlane.OutOfPlaneEnergy

All Implemented Interfaces:

Attributable, Updateable

public class OutOfPlaneEnergy
extends SimpleEnergyTerm

OutOfPlane energy term.

Nested Class Summary

Nested classes/interfaces inherited from class meshi.energy.AbstractEnergy

AbstractEnergy.UpdateableList

Field Summary

protected DistanceMatrix	distanceMatrix
protected TorsionList	torsionList The constructor associates any outOfPlane with its parameters.

Fields inherited from class meshi.energy.simpleEnergyTerms.SimpleEnergyTerm

elementsList, parametersList

Fields inherited from class meshi.energy.AbstractEnergy

comment, filter, INFINITY, NaN, on, updateableResources, weight

Constructor Summary

OutOfPlaneEnergy()

OutOfPlaneEnergy(DistanceMatrix distanceMatrix, TorsionList torsionList, OutOfPlaneParametersList parametersList, double weight)

Method Summary

EnergyElement	createElement(java.lang.Object baseElement, Parameters parameters)
Parameters	createParameters(java.lang.String line)
Parameters	getKey(java.lang.Object baseElement)
void	handleMissingParameters(java.lang.Object obj)

Methods inherited from class meshi.energy.simpleEnergyTerms.SimpleEnergyTerm

createElementsList, elementsList, evaluate, evaluateAtoms, test

Methods inherited from class meshi.energy.AbstractEnergy

addAttribute, comment, getAttribute, isOn, off, on, toArray, toArray, toArray, toArray, toString, update

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

torsionList

protected TorsionList torsionList

The constructor associates any outOfPlane with its parameters.

distanceMatrix

protected DistanceMatrix distanceMatrix

Constructor Detail

OutOfPlaneEnergy

public OutOfPlaneEnergy()

OutOfPlaneEnergy

public OutOfPlaneEnergy(DistanceMatrix distanceMatrix,
                        TorsionList torsionList,
                        OutOfPlaneParametersList parametersList,
                        double weight)

Method Detail

createParameters

public Parameters createParameters(java.lang.String line)

createElement

public EnergyElement createElement(java.lang.Object baseElement,
                                   Parameters parameters)

Specified by:

createElement in class SimpleEnergyTerm

getKey

public Parameters getKey(java.lang.Object baseElement)

handleMissingParameters

public void handleMissingParameters(java.lang.Object obj)

Overrides:

handleMissingParameters in class AbstractEnergy