meshi.energy.simpleEnergyTerms.inflate.simpleInflate
Class SimpleInflateEnergyElement

java.lang.Object
  meshi.energy.EnergyElement
      meshi.energy.simpleEnergyTerms.inflate.simpleInflate.SimpleInflateEnergyElement

public class SimpleInflateEnergyElement
extends EnergyElement

Field Summary

static double	ALPHA
protected Atom	atom1
protected Atom	atom1Copy
protected Atom	atom2
protected Atom	atom2Copy
protected double	dEdD
protected double	dEdX
protected double	dEdY
protected double	dEdZ
protected FreeDistance	distance
protected double	energy
protected double	target
protected double	weight

Fields inherited from class meshi.energy.EnergyElement

atoms, dFormatSrt, dFormatStd, DX, frozen, relativeDiffTolerance, VERY_SMALL, XYZ

Constructor Summary

SimpleInflateEnergyElement(Distance atoms, DistanceMatrix distanceMatrix, double weight)

Method Summary

double	evaluate()
void	scaleWeight(double factor)
protected void	setAtoms()

Methods inherited from class meshi.energy.EnergyElement

atoms, evaluateAtoms, frozen, test, updateFrozen

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

atom1

protected Atom atom1

atom2

protected Atom atom2

atom1Copy

protected Atom atom1Copy

atom2Copy

protected Atom atom2Copy

dEdD

protected double dEdD

dEdX

protected double dEdX

dEdY

protected double dEdY

dEdZ

protected double dEdZ

energy

protected double energy

weight

protected double weight

distance

protected FreeDistance distance

target

protected double target

ALPHA

public static final double ALPHA

See Also:

Constant Field Values

Constructor Detail

SimpleInflateEnergyElement

public SimpleInflateEnergyElement(Distance atoms,
                                  DistanceMatrix distanceMatrix,
                                  double weight)

Method Detail

setAtoms

protected void setAtoms()

Specified by:

setAtoms in class EnergyElement

evaluate

public double evaluate()

Specified by:

evaluate in class EnergyElement

scaleWeight

public void scaleWeight(double factor)