meshi.energy.simpleEnergyTerms.inflate.simpleInflate
Class SimpleInflate

java.lang.Object
  meshi.energy.AbstractEnergy
      meshi.energy.simpleEnergyTerms.SimpleEnergyTerm
          meshi.energy.simpleEnergyTerms.inflate.simpleInflate.SimpleInflate

All Implemented Interfaces:

Attributable, Updateable

public class SimpleInflate
extends SimpleEnergyTerm

Nested Class Summary

static class

SimpleInflate.TargetFilter

Nested classes/interfaces inherited from class meshi.energy.AbstractEnergy

AbstractEnergy.UpdateableList

Field Summary

private static AtomList	atomList
private static AtomList	atomListCopy
private DistanceMatrix	distanceMatrix
private static java.util.ArrayList	dummy
private Filter	filter
private double	rmsTarget

Fields inherited from class meshi.energy.simpleEnergyTerms.SimpleEnergyTerm

elementsList, parametersList

Fields inherited from class meshi.energy.AbstractEnergy

comment, INFINITY, NaN, on, updateableResources, weight

Constructor Summary

SimpleInflate()

SimpleInflate(DistanceMatrix distanceMatrix, double rmsTarget, double weight)

Method Summary

EnergyElement	createElement(java.lang.Object baseElement, Parameters parameters)
void	createElementsList(DistanceList baseList)
double	evaluate() Evaluates the current value of the energy function and update the derivatives.
void	on() Turnes the energyTerm ON.
double	weight()

Methods inherited from class meshi.energy.simpleEnergyTerms.SimpleEnergyTerm

createElementsList, elementsList, evaluateAtoms, test

Methods inherited from class meshi.energy.AbstractEnergy

addAttribute, comment, getAttribute, handleMissingParameters, isOn, off, toArray, toArray, toArray, toArray, toString, update

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

dummy

private static java.util.ArrayList dummy

atomList

private static AtomList atomList

atomListCopy

private static AtomList atomListCopy

distanceMatrix

private DistanceMatrix distanceMatrix

filter

private Filter filter

rmsTarget

private double rmsTarget

Constructor Detail

SimpleInflate

public SimpleInflate()

SimpleInflate

public SimpleInflate(DistanceMatrix distanceMatrix,
                     double rmsTarget,
                     double weight)

Method Detail

evaluate

public double evaluate()

Description copied from class: SimpleEnergyTerm

Evaluates the current value of the energy function and update the derivatives.

Overrides:

evaluate in class SimpleEnergyTerm

on

public void on()

Description copied from class: AbstractEnergy

Turnes the energyTerm ON.

Overrides:

on in class AbstractEnergy

createElementsList

public void createElementsList(DistanceList baseList)

createElement

public EnergyElement createElement(java.lang.Object baseElement,
                                   Parameters parameters)

Specified by:

createElement in class SimpleEnergyTerm

weight

public double weight()