Package meshi.energy.simpleEnergyTerms.compositeTorsions.ramachandranSidechain

Class Summary

CooperativeRamachandran
CooperativeRamachandranCreator
CooperativeRamachandranParameters
CooperativeZRamachandran	Created by IntelliJ IDEA.
CooperativeZRamachandranCreator	Created by IntelliJ IDEA.
CooperativeZRamachandranParameters	Created by IntelliJ IDEA.
RamachandranSidechainEnergy	A Ramachandran plot and sidechain torsions optimization energy term.
RamachandranSidechainEnergyCreator
RamachandranSidechainEnergyElement	Encapsulation of RamachandranSidechain energy value for a single residue.
RamachandranSidechainEnergyElementChi0	Ramachandran/Sidechain energy element for amino acids with no sidechain torsion angles: ALA, GLY.
RamachandranSidechainEnergyElementChi1	Ramachandran/Sidechain energy element for amino acids with one sidechain torsion angle: CYS, SER, THR, VAL.
RamachandranSidechainEnergyElementChi2	Ramachandran/Sidechain energy element for amino acids with no sidechain torsion angles: ASP, PHE, HIS, ILE, LEU, ASN, PRO, TRP, TYR.
RamachandranSidechainEnergyElementChi3	Ramachandran/Sidechain energy element for amino acids with three sidechain torsion angles: GLU, MET, GLN.
RamachandranSidechainEnergyElementChi4	Ramachandran/Sidechain parameters for amino acids with four sidechain torsion angles: LYS, ARG.
RamachandranSidechainParameters	Parameters used with the RamachandranSidechainEnergy term.
RamachandranSidechainParametersChi0	Ramachandran/Sidechain parameters for amino acids with no sidechain torsion angles: ALA, GLY.
RamachandranSidechainParametersChi1	Ramachandran/Sidechain parameters for amino acids with one sidechain torsion angle: CYS, SER, THR, VAL.
RamachandranSidechainParametersChi2	Ramachandran/Sidechain parameters for amino acids with two sidechain torsion angles: ASP, PHE, HIS, ILE, LEU, ASN, PRO, TRP, TYR.
RamachandranSidechainParametersChi3	Ramachandran/Sidechain parameters for amino acids with three sidechain torsion angles: GLU, MET, GLN.
RamachandranSidechainParametersChi4	Ramachandran/Sidechain parameters for amino acids with four sidechain torsion angles: LYS, ARG.
RamachandranSidechainParametersList
ResidueTorsionsAttribute