meshi.energy.simpleEnergyTerms.compositeTorsions.ramachandranSidechain
Class RamachandranSidechainEnergyElementChi4

java.lang.Object
  meshi.energy.EnergyElement
      meshi.energy.simpleEnergyTerms.compositeTorsions.ramachandranSidechain.RamachandranSidechainEnergyElement
          meshi.energy.simpleEnergyTerms.compositeTorsions.ramachandranSidechain.RamachandranSidechainEnergyElementChi4

All Implemented Interfaces:

CompositeTorsionsDefinitions

public class RamachandranSidechainEnergyElementChi4
extends RamachandranSidechainEnergyElement
implements CompositeTorsionsDefinitions

Ramachandran/Sidechain parameters for amino acids with four sidechain torsion angles: LYS, ARG.

Field Summary

Fields inherited from class meshi.energy.simpleEnergyTerms.compositeTorsions.ramachandranSidechain.RamachandranSidechainEnergyElement

residueTorsions, residueTypeIndex, rsp, weight

Fields inherited from class meshi.energy.EnergyElement

atoms, dFormatSrt, dFormatStd, DX, frozen, relativeDiffTolerance, VERY_SMALL, XYZ

Fields inherited from interface meshi.energy.simpleEnergyTerms.compositeTorsions.CompositeTorsionsDefinitions

ALL, CHI_1, CHI_2, CHI_3, CHI_4, COIL, HELIX, NUM_SIDECHAIN_TORSIONS, OMG, OMNI, PHI, POLYNOMIAL_CHI_1, POLYNOMIAL_CHI_1_CHI_2, POLYNOMIAL_CHI_1_CHI_2_TORSIONS, POLYNOMIAL_CHI_1_CHI_3, POLYNOMIAL_CHI_1_CHI_3_TORSIONS, POLYNOMIAL_CHI_1_CHI_4, POLYNOMIAL_CHI_1_CHI_4_TORSIONS, POLYNOMIAL_CHI_1_TORSIONS, POLYNOMIAL_PHI_PSI, POLYNOMIAL_PHI_PSI_CHI_1, POLYNOMIAL_PHI_PSI_CHI_1_TORSIONS, POLYNOMIAL_PHI_PSI_TORSIONS, PREPRO, PSI, SHEET, TOTAL_TORSION_ANGLES, UNIDENTIFIED_TORSION_TYPE

Constructor Summary

RamachandranSidechainEnergyElementChi4(ResidueTorsions residueTorsions, RamachandranSidechainParameters rsp, double weight)

Method Summary

double	evaluate()
protected boolean	legalResidueType() verifies residue type is a legal residue types for class.

Methods inherited from class meshi.energy.simpleEnergyTerms.compositeTorsions.ramachandranSidechain.RamachandranSidechainEnergyElement

monitor, setAtoms

Methods inherited from class meshi.energy.EnergyElement

atoms, evaluateAtoms, frozen, test, updateFrozen

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

RamachandranSidechainEnergyElementChi4

public RamachandranSidechainEnergyElementChi4(ResidueTorsions residueTorsions,
                                              RamachandranSidechainParameters rsp,
                                              double weight)

Method Detail

legalResidueType

protected boolean legalResidueType()

Description copied from class: RamachandranSidechainEnergyElement

verifies residue type is a legal residue types for class.

Specified by:

legalResidueType in class RamachandranSidechainEnergyElement

evaluate

public double evaluate()

Specified by:

evaluate in class EnergyElement