meshi.energy.simpleEnergyTerms.alphaTorsion
Class AlphaTorsionParameters

java.lang.Object
  meshi.energy.simpleEnergyTerms.alphaTorsion.AlphaTorsionParameters

All Implemented Interfaces:

Parameters

public class AlphaTorsionParameters
extends java.lang.Object
implements Parameters

Parsing a line in the parameter file of the alpha torsion energy. Each line in the parameter file of the alpha torsion energy is with the following format: {AA type} {Weight = the parabola height} {Starting torsion value value of the HELIX secondary structure} {Finish torsion value value of the HELIX secondary structure} {Starting torsion value value of the SHEET secondary structure} {Finish torsion value value of the SHEET secondary structure}

Field Summary

java.lang.String	aaLetter
double	endAlphaHELIX
double	endAlphaSHEET
double	startAlphaHELIX
double	startAlphaSHEET
double	weightAA

Constructor Summary

AlphaTorsionParameters(java.lang.String line)

Method Summary

java.lang.String

toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

aaLetter

public java.lang.String aaLetter

weightAA

public double weightAA

startAlphaHELIX

public double startAlphaHELIX

endAlphaHELIX

public double endAlphaHELIX

startAlphaSHEET

public double startAlphaSHEET

endAlphaSHEET

public double endAlphaSHEET

Constructor Detail

AlphaTorsionParameters

public AlphaTorsionParameters(java.lang.String line)

Method Detail

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object