meshi.energy.simpleEnergyTerms.alphaAngle
Class AlphaAngleParameters

java.lang.Object
  meshi.energy.simpleEnergyTerms.alphaAngle.AlphaAngleParameters

All Implemented Interfaces:

Parameters

public class AlphaAngleParameters
extends java.lang.Object
implements Parameters

Parsing a line in the parameter file of the alpha angle energy. Each line in the parameter file of the alpha angle energy is with the following format: {AA type} {Weight = the parabola height} {Starting angle value of the ALL secondary structure} {Finish angle value of the ALL secondary structure} {Starting angle value of the HELIX secondary structure} {Finish angle value of the HELIX secondary structure} {Starting angle value of the SHEET secondary structure} {Finish angle value of the SHEET secondary structure} {Starting angle value of the COIL secondary structure} {Finish angle value of the COIL secondary structure}

Field Summary

java.lang.String	aaLetter
double	endAlphaALL
double	endAlphaCOIL
double	endAlphaHELIX
double	endAlphaSHEET
double	startAlphaALL
double	startAlphaCOIL
double	startAlphaHELIX
double	startAlphaSHEET
double	weightAA

Constructor Summary

AlphaAngleParameters(java.lang.String line)

Method Summary

java.lang.String

toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

aaLetter

public java.lang.String aaLetter

weightAA

public double weightAA

startAlphaALL

public double startAlphaALL

endAlphaALL

public double endAlphaALL

startAlphaHELIX

public double startAlphaHELIX

endAlphaHELIX

public double endAlphaHELIX

startAlphaSHEET

public double startAlphaSHEET

endAlphaSHEET

public double endAlphaSHEET

startAlphaCOIL

public double startAlphaCOIL

endAlphaCOIL

public double endAlphaCOIL

Constructor Detail

AlphaAngleParameters

public AlphaAngleParameters(java.lang.String line)

Method Detail

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object