meshi.energy.pairwiseNonBondedTerms.excludedVolOLD
Class ExcludedVolOLD

java.lang.Object
  meshi.energy.AbstractEnergy
      meshi.energy.pairwiseNonBondedTerms.NonBondedEnergyTerm
          meshi.energy.pairwiseNonBondedTerms.excludedVolOLD.ExcludedVolOLD

All Implemented Interfaces:

Attributable, Updateable

public class ExcludedVolOLD
extends NonBondedEnergyTerm

Nested Class Summary

Nested classes/interfaces inherited from class meshi.energy.AbstractEnergy

AbstractEnergy.UpdateableList

Field Summary

protected Filter	filter
protected double	Rfac

Fields inherited from class meshi.energy.pairwiseNonBondedTerms.NonBondedEnergyTerm

distanceMatrix, energyElement

Fields inherited from class meshi.energy.AbstractEnergy

comment, INFINITY, NaN, on, updateableResources, weight

Constructor Summary

ExcludedVolOLD()

ExcludedVolOLD(DistanceMatrix distanceMatrix, double Rfac, double weight, Filter filter, double[][] parameters)

Method Summary

double

evaluate() Evaluates energy for each distance

Methods inherited from class meshi.energy.pairwiseNonBondedTerms.NonBondedEnergyTerm

evaluateAtoms, test

Methods inherited from class meshi.energy.AbstractEnergy

addAttribute, comment, getAttribute, handleMissingParameters, isOn, off, on, toArray, toArray, toArray, toArray, toString, update

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

Rfac

protected double Rfac

filter

protected Filter filter

Constructor Detail

ExcludedVolOLD

public ExcludedVolOLD()

ExcludedVolOLD

public ExcludedVolOLD(DistanceMatrix distanceMatrix,
                      double Rfac,
                      double weight,
                      Filter filter,
                      double[][] parameters)

Method Detail

evaluate

public double evaluate()

Description copied from class: NonBondedEnergyTerm

Evaluates energy for each distance

Overrides:

evaluate in class NonBondedEnergyTerm

Returns:

a sum of all energy elements