meshi.energy.pairwiseNonBondedTerms.ExcludedVol
Class ExcludedVol

java.lang.Object
  meshi.energy.AbstractEnergy
      meshi.energy.pairwiseNonBondedTerms.NonBondedEnergyTerm
          meshi.energy.pairwiseNonBondedTerms.ExcludedVol.ExcludedVol

All Implemented Interfaces:

Attributable, Classes, Updateable

public class ExcludedVol
extends NonBondedEnergyTerm
implements Classes

Nested Class Summary

Nested classes/interfaces inherited from class meshi.energy.AbstractEnergy

AbstractEnergy.UpdateableList

Field Summary

(package private) Filter

filter

Fields inherited from class meshi.energy.pairwiseNonBondedTerms.NonBondedEnergyTerm

distanceMatrix, energyElement

Fields inherited from class meshi.energy.AbstractEnergy

comment, INFINITY, NaN, on, updateableResources, weight

Fields inherited from interface meshi.util.Classes

BOND_ELEMENT_CLASS, BOND_PARAMETERS_CLASS

Constructor Summary

ExcludedVol()

ExcludedVol(DistanceMatrix distanceMatrix, ExcludedVolParametersList parametersList, int type, double weight, double Rfac, Filter filter)

Method Summary

double

evaluate() Evaluates energy for each distance

Methods inherited from class meshi.energy.pairwiseNonBondedTerms.NonBondedEnergyTerm

evaluateAtoms, test

Methods inherited from class meshi.energy.AbstractEnergy

addAttribute, comment, getAttribute, handleMissingParameters, isOn, off, on, toArray, toArray, toArray, toArray, toString, update

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

filter

Filter filter

Constructor Detail

ExcludedVol

public ExcludedVol()

ExcludedVol

public ExcludedVol(DistanceMatrix distanceMatrix,
                   ExcludedVolParametersList parametersList,
                   int type,
                   double weight,
                   double Rfac,
                   Filter filter)

Method Detail

evaluate

public double evaluate()

Description copied from class: NonBondedEnergyTerm

Evaluates energy for each distance

Overrides:

evaluate in class NonBondedEnergyTerm

Returns:

a sum of all energy elements