Package meshi.energy

energy - overview

See:
Description

Interface Summary

Parameters

The parameters needed for the evaluation of an energy elements.

Class Summary

AbstractEnergy	A super class for all meshi energy terms.
AbstractEnergy.IsEnergy
CooperativeEnergyTerm	A super class for those energy terms that operate on the entire protein, or on a specific group of atoms that occur only once.
EnergyCreator	Factory classes that generate energy terms.
EnergyElement	The essence of an energy term - its application to a minimal set of atoms.
TotalEnergy	A generic class for all meshi energy functions.
TotalEnergy.EnergyComparator
TotalEnergy.FreeAtom
TotalEnergy.IsEnergy

Package meshi.energy Description

energy - overview

All the general purpose energy related classes. Specific energy terms are sub packages with classes that extend the clases of this package.