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Hierarchy For Package meshi.energy.hydrogenBond
Package Hierarchies:
All Packages
Class Hierarchy
java.lang.Object
java.util.AbstractCollection<E> (implements java.util.Collection<E>)
java.util.AbstractList<E> (implements java.util.List<E>)
java.util.ArrayList<E> (implements java.lang.Cloneable, java.util.List<E>, java.util.RandomAccess, java.io.Serializable)
meshi.energy.simpleEnergyTerms.
ParametersList
meshi.energy.hydrogenBond.
LennardJonesParametersList
meshi.energy.hydrogenBond.
HydrogenBondsParametersList
meshi.energy.
AbstractEnergy
(implements meshi.util.
Attributable
, meshi.util.
Updateable
)
meshi.energy.pairwiseNonBondedTerms.
NonBondedEnergyTerm
meshi.energy.hydrogenBond.
HydrogenBondsEnergy
meshi.geometry.
DistanceList
(implements java.lang.Iterable<T>)
meshi.energy.hydrogenBond.
HBdistanceList
meshi.energy.hydrogenBond.
HBondList
(implements meshi.util.
Updateable
)
meshi.energy.
EnergyCreator
(implements meshi.util.
KeyWords
, meshi.parameters.
MeshiPotential
)
meshi.energy.hydrogenBond.
HydrogenBondsCreator
(implements meshi.util.
KeyWords
)
meshi.energy.
EnergyElement
meshi.energy.pairwiseNonBondedTerms.
NonBondedEnergyElement
meshi.energy.hydrogenBond.
HydrogenBondsEnergyElement
meshi.energy.hydrogenBond.
GoodResiduesForHB
(implements meshi.util.filters.
Filter
)
meshi.energy.hydrogenBond.
GoodResiduesForHB.GoodSS
(implements meshi.util.filters.
Filter
)
meshi.energy.hydrogenBond.
GoodResiduesForHB.IsNot13
(implements meshi.util.filters.
Filter
)
meshi.energy.hydrogenBond.
HB_AtomAttribute
(implements meshi.util.
MeshiAttribute
)
meshi.energy.hydrogenBond.
HB_DistanceAttribute
(implements meshi.util.
MeshiAttribute
)
meshi.energy.hydrogenBond.
HBondList.IsAlive
(implements meshi.util.filters.
Filter
)
meshi.energy.hydrogenBond.
HBondList.IsWithInRmax
(implements meshi.util.filters.
Filter
)
meshi.energy.hydrogenBond.
HBondList.WithinRmaxIterator
(implements java.util.Iterator<E>)
meshi.energy.hydrogenBond.
IsHO
(implements meshi.util.filters.
Filter
)
meshi.energy.hydrogenBond.
LennardJonesParameters
(implements meshi.util.
MeshiAttribute
, meshi.energy.
Parameters
)
meshi.energy.hydrogenBond.
HydrogenBondsParameters
meshi.energy.hydrogenBond.
LennardJonesParameters.isA
(implements meshi.util.filters.
Filter
)
java.lang.Throwable (implements java.io.Serializable)
java.lang.Exception
java.lang.RuntimeException
java.lang.IllegalStateException
meshi.energy.hydrogenBond.
SynchronizedUpdateException
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