meshi.energy.hydrogenBond
Class LennardJonesParameters

java.lang.Object
  meshi.energy.hydrogenBond.LennardJonesParameters

All Implemented Interfaces:

Parameters, MeshiAttribute

Direct Known Subclasses:

HydrogenBondsParameters

public class LennardJonesParameters
extends java.lang.Object
implements MeshiAttribute, Parameters

Nested Class Summary

private class

LennardJonesParameters.isA

Field Summary

double	epsilon
static int	key
double	minusTwelveSigma6
double	sigma
double	sigma6
double	sigma6EpsilonFour

Fields inherited from interface meshi.util.MeshiAttribute

BEAUTIFY_ATTRIBUTE, CN_ATTRIBUTE, DISTANCE_FROM_CATALYTIC_ATTRIBUTE, EXCLUDED_VOLUME_ELEMENT_ATTRIBUTE, GAUSSIAN_ALPHA, GAUSSIAN_ATTRIBUTE, HYDROGEN_BONDS_ATTRIBUTE, LENNARD_JONES_ELEMENT_ATTRIBUTE, LOOP_RESIDUE, ORIGINAL_ATOM, RESIDUE_ATTRIBUTE, RESIDUE_TORSIONS_ATTRIBUTE, SECONDARY_STRUCTURE_ATTRIBUTE, SEQUENCE_ALIGNMENT_COLUMN_ATTRIBUTE, SIDE_CHAIN_SOLVATE_ALL_ATOM_ATTRIBUTE, SOLVATE_ALL_ATOM_ATTRIBUTE, SOLVATE_CA_ATTRIBUTE, SOLVATE_ROT1_ATTRIBUTE, SUMMA_ATTRIBUTE

Constructor Summary

LennardJonesParameters()

LennardJonesParameters(java.util.StringTokenizer st)

Method Summary

Parameters	create(java.util.StringTokenizer stringTokenizer)
Filter	isA()
int	key()
java.lang.String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

epsilon

public final double epsilon

sigma

public final double sigma

sigma6

public final double sigma6

sigma6EpsilonFour

public final double sigma6EpsilonFour

minusTwelveSigma6

public final double minusTwelveSigma6

key

public static final int key

See Also:

Constant Field Values

Constructor Detail

LennardJonesParameters

public LennardJonesParameters()

LennardJonesParameters

public LennardJonesParameters(java.util.StringTokenizer st)

Method Detail

isA

public Filter isA()

key

public final int key()

Specified by:

key in interface MeshiAttribute

create

public Parameters create(java.util.StringTokenizer stringTokenizer)

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object