meshi.applications.prediction.homology
Class NonFrozensRadiusFilter

java.lang.Object
  meshi.applications.prediction.homology.NonFrozensRadiusFilter

All Implemented Interfaces:

Filter

public class NonFrozensRadiusFilter
extends java.lang.Object
implements Filter

Field Summary

(package private) int	bondDepth
(package private) AtomList	nonFrozens
(package private) double	radius

Constructor Summary

NonFrozensRadiusFilter(AtomList atoms, double radius, int bondDepth)

Method Summary

boolean	accept(java.lang.Object obj)
private boolean	inRadiusFromNonFrozen(Atom atom)
private boolean	isConnectedToNonFrozen(Atom atom, int depth)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

nonFrozens

AtomList nonFrozens

radius

double radius

bondDepth

int bondDepth

Constructor Detail

NonFrozensRadiusFilter

public NonFrozensRadiusFilter(AtomList atoms,
                              double radius,
                              int bondDepth)

Method Detail

accept

public boolean accept(java.lang.Object obj)

Specified by:

accept in interface Filter

isConnectedToNonFrozen

private boolean isConnectedToNonFrozen(Atom atom,
                                       int depth)

inRadiusFromNonFrozen

private boolean inRadiusFromNonFrozen(Atom atom)