Class Pdb2Fasta.MyAtom

java.lang.Object
  meshi.molecularElements.atoms.Atom
      Pdb2Fasta.MyAtom

All Implemented Interfaces:

java.lang.Comparable, Attributable, Verbose

Enclosing class:

Pdb2Fasta

private static class Pdb2Fasta.MyAtom
extends Atom

Field Summary

private java.lang.String

alternateLocation

Fields inherited from class meshi.molecularElements.atoms.Atom

bonded, core, ID, molecularSystem, name, residue

Constructor Summary

Pdb2Fasta.MyAtom(Atom atom, java.lang.String residueName)

Method Summary

java.lang.String	alternateLocation()
static Residue	getNewResidue(Residue oldResidue, java.lang.String newName)

Methods inherited from class meshi.molecularElements.atoms.Atom

active, addAttribute, addEnergy, addToFx, addToFy, addToFz, addToX, addToY, addToZ, backboneC, backboneCA, backboneH, backboneN, backboneO, bbAtom, bond, bonded, chain, comment, compareTo, defrost, distanceFrom, emptyBonded, energy, freeze, frozen, fx, fy, fz, getAttribute, hide, isBackbone, isCarbon, isHydrogen, isNitrogen, isOxygen, isSulfur, name, nameIs, nameIs, normal, nowhere, number, numberOfAtoms, occupancy, pdbLine, randomize, randomize, reliability, resetCoordinates, resetEnergy, residue, residueName, residueNumber, setFx, setFy, setFz, setMolecularSystem, setReliability, setResidue, setResidueNumber, setStatus, setTemperatureFactor, setType, setXYZ, setXYZ, setXYZ, temperatureFactor, toString, type, verbose, x, X, y, Y, z, Z

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

alternateLocation

private java.lang.String alternateLocation

Constructor Detail

Pdb2Fasta.MyAtom

public Pdb2Fasta.MyAtom(Atom atom,
                        java.lang.String residueName)

Method Detail

getNewResidue

public static Residue getNewResidue(Residue oldResidue,
                                    java.lang.String newName)

alternateLocation

public java.lang.String alternateLocation()

Overrides:

alternateLocation in class Atom