Class HydrogenTest.PolyAla

java.lang.Object
  meshi.molecularElements.Protein
      HydrogenTest.PolyAla

Enclosing class:

HydrogenTest

private static class HydrogenTest.PolyAla
extends Protein

Nested Class Summary

Nested classes/interfaces inherited from class meshi.molecularElements.Protein

Protein.BackboneFilter

Field Summary

Fields inherited from class meshi.molecularElements.Protein

angles, atoms, bonds, chains, firstResidueIndex, modelNumber, name, residues, torsions

Constructor Summary

HydrogenTest.PolyAla(int length, java.lang.String chainName, CommandList commands)

Method Summary

private static ResidueSequence

getSequence(int length)

Methods inherited from class meshi.molecularElements.Protein

addChain, allYouWantToKnow, atoms, bonds, chain, chains, defrost, firstResidueIndex, firstResidues, freeze, freeze, getAtom, getProteinName, getProteinName, getSequence, missingResidues, modelNumber, name, nowhereAtoms, printAtomsToFile, residue, residue, residueAt, residues, sequence, setName, setSS, setSS, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

HydrogenTest.PolyAla

public HydrogenTest.PolyAla(int length,
                            java.lang.String chainName,
                            CommandList commands)

Method Detail

getSequence

private static ResidueSequence getSequence(int length)