Class HomologyModeling.HomologyLogger

java.lang.Object
  HomologyModeling.HomologyLogger

All Implemented Interfaces:

Logger

Enclosing class:

HomologyModeling

private static class HomologyModeling.HomologyLogger
extends java.lang.Object
implements Logger

Field Summary

private MeshiWriter	output
private Protein	reference
private boolean	referenceExists

Constructor Summary

HomologyModeling.HomologyLogger(MeshiWriter output, Protein model, CommandList commands)

Method Summary

void	afterBBcorrection(Protein target, java.lang.String label)
void	afterRelaxation(Protein target, TotalEnergy energy, java.lang.String label)
void	afterRelaxation2(Protein target, TotalEnergy energy)
void	afterRelaxation3(Protein target, TotalEnergy energy)
void	knot()
void	loopsAdded(Protein target)
void	mcm(TotalEnergy energy, int mcmStep)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

referenceExists

private boolean referenceExists

output

private MeshiWriter output

reference

private Protein reference

Constructor Detail

HomologyModeling.HomologyLogger

public HomologyModeling.HomologyLogger(MeshiWriter output,
                                       Protein model,
                                       CommandList commands)

Method Detail

loopsAdded

public void loopsAdded(Protein target)

afterBBcorrection

public void afterBBcorrection(Protein target,
                              java.lang.String label)

afterRelaxation

public void afterRelaxation(Protein target,
                            TotalEnergy energy,
                            java.lang.String label)

afterRelaxation2

public void afterRelaxation2(Protein target,
                             TotalEnergy energy)

afterRelaxation3

public void afterRelaxation3(Protein target,
                             TotalEnergy energy)

knot

public void knot()

mcm

public void mcm(TotalEnergy energy,
                int mcmStep)

Specified by:

mcm in interface Logger