Class Beautify.BeautifyLogger

java.lang.Object
  Beautify.BeautifyLogger

All Implemented Interfaces:

Logger

Enclosing class:

Beautify

private static class Beautify.BeautifyLogger
extends java.lang.Object
implements Logger

Field Summary

private Protein	mcmModel
private OriginalAtoms	originalAtoms
private MeshiWriter	output
private Protein	reference
private boolean	referenceExists
private Protein	shotgun

Constructor Summary

Beautify.BeautifyLogger(MeshiWriter output, Protein shotgun, CommandList commands)

Method Summary

void	initialRmsGdt()
void	intermediateCAModel(int modelNumber, Protein model, double energy, int number)
void	knot()
void	mcm(TotalEnergy energy, int mcmStep)
void	model(Protein model, TotalEnergy totalEnergy, java.lang.String comment, boolean header, int number)
void	modelHeader(TotalEnergy energy)
void	setMcmModel(Protein model)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

referenceExists

private boolean referenceExists

output

private MeshiWriter output

shotgun

private Protein shotgun

reference

private Protein reference

originalAtoms

private OriginalAtoms originalAtoms

mcmModel

private Protein mcmModel

Constructor Detail

Beautify.BeautifyLogger

public Beautify.BeautifyLogger(MeshiWriter output,
                               Protein shotgun,
                               CommandList commands)

Method Detail

knot

public void knot()

initialRmsGdt

public void initialRmsGdt()

intermediateCAModel

public void intermediateCAModel(int modelNumber,
                                Protein model,
                                double energy,
                                int number)

model

public void model(Protein model,
                  TotalEnergy totalEnergy,
                  java.lang.String comment,
                  boolean header,
                  int number)

modelHeader

public void modelHeader(TotalEnergy energy)

mcm

public void mcm(TotalEnergy energy,
                int mcmStep)

Specified by:

mcm in interface Logger

setMcmModel

public void setMcmModel(Protein model)