Linked Processes Browser

Links to show All links Only links that contain a specific GO-term:
Please specify a GO-term
Show me all links containing the specified GO-term Show me all processes that the specified GO-term is linked to Show me all processes that are linked to the specified GO-term
These choices are relevant only if you specify one GO-term.
Linkage type Yeast, PPI-linked processes Yeast, expression-linked processes Yeast, GI-ilnked processes Fly, PPI-linked processes Human, PPI-linked processes
Note: If you mark more than one list, only links that appear in the intersection of the selected lists will be shown.
Optional: Show me only links with p-value below

The p-value is computed for each pair of linked processes. If more than one linkage types is selected, the p-value of at least one of the linklage types should be below the specified threshold.
Optional:
Show me only links between terms whose semantic similarity is
below

Semantic similarity is measured per organism. If more than one organism is selected, the semantic similarity of at least one organism should be in the specified range.
and above
"is a" links Don't show me links between terms a and b, if a "is a" b
term 'a' "is a" term 'b', if 'b' is an ancestor of 'a' in the GO-hierarchy
Optional:
reduce the number of links shown, by showing only the most specific links showing only the most general links
The linkage between terms a1 and b1 is more specific than the linkage between terms a2 and b2, if a1 is identical or more specific than b1 and a2 is identical or more specific than b2.
The opposite holds for generality.
Optional:
Reduce the number of links shown by showing onlt links between terms that are not too frequent.
The upper bound for term frequency is:

The frequency of the term is equal to the number of known genes that are annotated with the term.
Specific terms have few genes annotated with, while general terms have many genes annotated with.
The query may take a couple of minutes
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