The PredictProtein server (Burkhard Rost)
Advanced submission form
PHDsec PHDacc PHDhtm TOPITS MaxHom EvalSec Blast ProSite ProDom
PP Help

Bottom - PP home - PP help TOC - META PP submission - Default submission form (fewer options) - Expert submission form (more options)

If you don't select anything, the default is that all programs are run! ( ? for programs and thresholds)


Type the required information into the fields Description of field (click on description to get help)


Your email address [ watch typpos -:) ]
Password (only for commercial users)


Which type of prediction do you require?
Specify the format for the returned multiple-sequence alignment


Output options
BLAST Return BLAST output from SWISS-PROT search
PHD msf PHD rdb PHD col PHD casp2 Return additional PHD output
TOPITS hssp TOPITS strip TOPITS own Additional TOPITS output
HTML formatted results HTML for printouts
HTML with PHD graphs HTML with PHD graphs for printouts
Return result in HTML (for WWW browsers)
Results on FTP site, NOT in email Results not sent to avoid email floods
concise output Fewer explanations of output
do NOT align
do NOT filter returned alignment
do NOT filter alignment used for PHD
Process alignment
NO prosite NO prodom NO seg NO coils Switch off default methods
(e.g. to reduce output, or to save time)


One-line name of protein (not necessary)
Specify the format of your sequence(s), alignment, or prediction
Either choose a file with the respective information, or ...


Paste, or type your sequence

  • amino acids in one-letter code
  • any number of white spaces allowed
  • non-standard amino acids to 'X'


  • use SRS to get your sequence from a public database



Batch or interactive?
Final action
Wait? How long to wait (status of PP queue)?
Links WWW services for sequence analysis
Submit to META CUBIC home PROSITE ProDom PredictProtein Mail to PP Help


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