Submit to PredictProtein (advanced)

The PredictProtein server (Burkhard Rost)
Advanced submission form
PHDsec PHDacc PHDhtm TOPITS MaxHom EvalSec Blast ProSite ProDom

If you don't select anything, the default is that all programs are run! ( ? for programs and thresholds)

Type the required information into the fields	Description of field (click on description to get help)

	Your email address [ watch typpos -:) ]
	Password (only for commercial users)

	Which type of prediction do you require?
	Specify the format for the returned multiple-sequence alignment

Output options
BLAST	Return BLAST output from SWISS-PROT search
PHD msf PHD rdb PHD col PHD casp2	Return additional PHD output
TOPITS hssp TOPITS strip TOPITS own	Additional TOPITS output

HTML formatted results HTML for printouts HTML with PHD graphs HTML with PHD graphs for printouts	Return result in HTML (for WWW browsers)
Results on FTP site, NOT in email	Results not sent to avoid email floods

concise output	Fewer explanations of output

do NOT align do NOT filter returned alignment do NOT filter alignment used for PHD	Process alignment
NO prosite NO prodom NO seg NO coils	Switch off default methods (e.g. to reduce output, or to save time)

	One-line name of protein (not necessary)
	Specify the format of your sequence(s), alignment, or prediction
	Either choose a file with the respective information, or ...
	Paste, or type your sequence amino acids in one-letter code any number of white spaces allowed non-standard amino acids to 'X' use SRS to get your sequence from a public database

	Batch or interactive?
	Final action

How long to wait (status of PP queue)?

WWW services for sequence analysis