Coils output appended by default
Note 1: comments marked by "## COMMENT: "
Note 2: to surpress a prediction of COILED coil regions use in the input the keyword no coils
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COILS version 2.1
using MTK matrix.
no weights
Input file is /home/phd/server/work/t-retCoils-ok-10320.fastaGuideIn
>GCN4_YEAST
Residue Window=14 Window=21 Window=28
Score Probability Score Probability Score Probability
...
1 T a 0.588 0.000 a 0.707 0.000 a 0.872 0.000
2 S b 0.693 0.000 b 0.805 0.000 b 0.898 0.000
3 L c 0.693 0.000 c 0.877 0.001 c 0.898 0.000
4 F d 0.693 0.000 d 0.918 0.001 d 0.898 0.000
5 D e 0.764 0.000 e 0.918 0.001 e 0.898 0.000
6 N f 0.764 0.000 f 1.017 0.003 f 0.898 0.000
7 D g 0.764 0.000 g 1.017 0.003 g 0.898 0.000
8 I a 0.764 0.000 a 1.017 0.003 a 0.898 0.000
9 P b 0.764 0.000 b 1.017 0.003 b 0.898 0.000
10 V c 1.120 0.007 c 1.032 0.004 c 0.898 0.000
11 T d 1.203 0.014 d 1.032 0.004 d 0.898 0.000
12 T e 1.203 0.014 e 1.032 0.004 e 0.898 0.000
13 D f 1.385 0.066 f 1.032 0.004 f 0.898 0.000
14 D g 1.429 0.095 g 1.032 0.004 g 0.898 0.000
15 V a 1.429 0.095 a 1.032 0.004 a 0.898 0.000
16 S b 1.429 0.095 b 1.032 0.004 b 0.898 0.000
17 L c 1.429 0.095 c 1.032 0.004 c 0.898 0.000
18 A d 1.429 0.095 d 1.032 0.004 d 0.898 0.000
19 D e 1.429 0.095 e 1.032 0.004 e 0.898 0.000
20 K f 1.429 0.095 f 1.032 0.004 f 0.898 0.000
21 A g 1.429 0.095 g 1.032 0.004 g 0.898 0.000
22 I a 1.429 0.095 a 1.032 0.004 a 0.898 0.000
23 E b 1.429 0.095 b 1.032 0.004 b 0.898 0.000
24 S c 1.429 0.095 c 1.032 0.004 c 0.898 0.000
25 T d 1.429 0.095 d 1.032 0.004 d 0.898 0.000
26 E e 1.429 0.095 e 1.032 0.004 e 0.898 0.000
27 E f 1.429 0.095 f 1.032 0.004 f 0.898 0.000
28 V g 1.293 0.030 g 1.032 0.004 g 0.898 0.000
29 S a 1.164 0.010 a 1.032 0.004 a 0.898 0.000
30 L b 1.110 0.006 b 1.032 0.004 b 0.877 0.000
31 V c 1.107 0.006 c 1.032 0.004 c 0.876 0.000
32 P d 0.758 0.000 d 0.857 0.000 d 0.797 0.000
33 S e 0.758 0.000 e 0.857 0.000 e 0.797 0.000
34 N f 0.758 0.000 f 0.857 0.000 f 0.797 0.000
35 L g 0.726 0.000 g 0.813 0.000 g 0.797 0.000
36 E a 0.616 0.000 a 0.766 0.000 a 0.797 0.000
37 V b 0.528 0.000 b 0.766 0.000 b 0.797 0.000
38 S c 0.528 0.000 c 0.766 0.000 c 0.797 0.000
39 T d 0.528 0.000 d 0.723 0.000 d 0.797 0.000
40 T e 0.459 0.000 e 0.723 0.000 e 0.797 0.000
41 S f 0.427 0.000 f 0.698 0.000 f 0.781 0.000
42 F e 0.399 0.000 g 0.576 0.000 g 0.675 0.000
43 L a 0.471 0.000 a 0.576 0.000 a 0.675 0.000
44 P b 0.471 0.000 b 0.489 0.000 b 0.598 0.000
45 T a 0.749 0.000 a 0.719 0.000 a 0.737 0.000
46 P b 0.881 0.001 b 0.802 0.000 b 0.737 0.000
47 V c 1.334 0.043 c 1.057 0.005 c 0.865 0.000
48 L d 1.487 0.153 d 1.137 0.012 d 0.922 0.001
49 E e 1.487 0.153 e 1.137 0.012 e 0.922 0.001
50 D f 1.487 0.153 f 1.137 0.012 f 0.922 0.001
51 A g 1.487 0.153 g 1.137 0.012 g 0.922 0.001
52 K a 1.487 0.153 a 1.137 0.012 a 0.922 0.001
53 L b 1.487 0.153 b 1.137 0.012 b 0.922 0.001
54 T c 1.487 0.153 c 1.137 0.012 c 0.930 0.001
55 Q d 1.487 0.153 d 1.137 0.012 d 0.930 0.001
56 T e 1.487 0.153 e 1.137 0.012 e 0.980 0.001
57 R f 1.487 0.153 f 1.137 0.012 f 0.980 0.001
58 K g 1.487 0.153 g 1.137 0.012 g 0.980 0.001
59 V a 1.487 0.153 a 1.137 0.012 a 0.980 0.001
60 K b 1.487 0.153 b 1.137 0.012 b 0.980 0.001
61 K c 1.487 0.153 c 1.137 0.012 c 0.980 0.001
62 P d 1.013 0.003 d 1.137 0.012 d 0.980 0.001
63 N e 1.013 0.003 e 1.137 0.012 e 0.980 0.001
64 S f 1.013 0.003 f 1.137 0.012 f 0.980 0.001
65 V g 1.013 0.003 g 1.137 0.012 g 0.980 0.001
66 V a 1.013 0.003 a 1.137 0.012 a 0.980 0.001
67 K b 1.013 0.003 b 1.137 0.012 b 0.980 0.001
68 K c 1.013 0.003 c 1.137 0.012 c 0.980 0.001
69 S d 0.984 0.002 d 1.022 0.003 d 0.980 0.001
70 H e 0.977 0.002 e 1.014 0.003 e 0.980 0.001
71 H f 0.977 0.002 f 1.014 0.003 f 0.980 0.001
72 V g 0.977 0.002 g 1.014 0.003 g 0.980 0.001
73 G a 0.977 0.002 a 1.014 0.003 a 0.980 0.001
74 K b 1.168 0.010 b 1.014 0.003 b 0.980 0.001
75 D c 1.168 0.010 c 1.014 0.003 c 0.980 0.001
76 D d 1.168 0.010 d 1.014 0.003 d 0.980 0.001
77 E e 1.168 0.010 e 1.014 0.003 e 0.980 0.001
78 S f 1.168 0.010 f 1.014 0.003 f 0.980 0.001
79 R g 1.168 0.010 g 1.014 0.003 g 0.980 0.001
80 L a 1.168 0.010 a 1.014 0.003 a 0.980 0.001
81 D b 1.168 0.010 b 1.014 0.003 b 0.980 0.001
82 H c 1.168 0.010 c 1.014 0.003 c 0.980 0.001
83 L d 1.168 0.010 d 1.014 0.003 d 0.980 0.001
84 G e 1.168 0.010 e 0.917 0.001 e 0.935 0.001
85 V f 1.168 0.010 f 0.884 0.001 f 0.879 0.000
86 V g 1.168 0.010 g 0.884 0.001 g 0.817 0.000
87 A a 1.168 0.010 a 0.884 0.001 a 0.810 0.000
88 Y b 0.918 0.001 b 0.884 0.001 b 0.797 0.000
89 N c 0.893 0.001 c 0.884 0.001 c 0.797 0.000
90 R f 0.808 0.001 d 0.884 0.001 d 0.797 0.000
91 K g 0.808 0.001 e 0.884 0.001 e 0.797 0.000
92 Q a 0.808 0.001 f 0.884 0.001 f 0.797 0.000
93 R b 0.808 0.001 g 0.884 0.001 g 0.797 0.000
94 S c 0.808 0.001 a 0.884 0.001 a 0.756 0.000
95 I d 0.808 0.001 d 0.789 0.000 e 0.709 0.000
96 P b 0.564 0.000 d 0.539 0.000 d 0.549 0.000
97 L c 0.564 0.000 e 0.536 0.000 e 0.549 0.000
98 S d 0.564 0.000 f 0.511 0.000 f 0.549 0.000
99 P x 0.000 0.000 x 0.000 0.000 x 0.000 0.000
100 I b 0.402 0.000 b 0.587 0.000 b 0.638 0.000
101 V c 0.480 0.000 c 0.661 0.000 c 0.712 0.000
102 P d 0.530 0.000 d 0.693 0.000 d 0.742 0.000
103 E e 0.701 0.000 e 0.722 0.000 e 0.877 0.000
104 S f 0.701 0.000 f 0.722 0.000 f 0.877 0.000
105 S g 0.717 0.000 g 0.722 0.000 g 0.877 0.000
106 D a 0.734 0.000 a 0.722 0.000 a 0.877 0.000
107 P b 0.915 0.001 b 0.882 0.001 b 0.919 0.001
108 A c 1.306 0.034 f 1.205 0.028 f 1.150 0.023
109 A d 1.306 0.034 g 1.231 0.039 g 1.168 0.031
110 L e 1.306 0.034 a 1.231 0.039 a 1.168 0.031
111 K f 1.306 0.034 b 1.231 0.039 c 1.257 0.137
112 R g 1.306 0.034 c 1.231 0.039 d 1.283 0.202
113 A a 1.306 0.034 d 1.231 0.039 e 1.525 0.964
114 R b 1.306 0.034 f 1.397 0.267 f 1.549 0.978
115 N c 1.306 0.034 g 1.397 0.267 g 1.549 0.978
116 T d 1.306 0.034 a 1.398 0.272 a 1.549 0.978
117 E e 1.306 0.034 b 1.559 0.786 b 1.608 0.993
118 A f 1.306 0.034 c 1.559 0.786 c 1.608 0.993
119 A g 1.306 0.034 d 1.640 0.924 d 1.608 0.993
120 R a 1.306 0.034 e 1.671 0.951 e 1.608 0.993
121 R f 1.400 0.075 f 1.671 0.951 f 1.608 0.993
122 S g 1.400 0.075 g 1.671 0.951 g 1.608 0.993
123 R a 1.538 0.226 a 1.671 0.951 a 1.608 0.993
124 A b 1.643 0.446 b 1.682 0.959 b 1.634 0.996
125 R c 1.741 0.680 c 1.682 0.959 c 1.634 0.996
126 K d 1.863 0.880 d 1.682 0.959 d 1.634 0.996
127 L e 2.311 0.999 e 1.682 0.959 e 1.820 1.000
128 Q f 2.311 0.999 f 1.839 0.996 f 1.895 1.000
129 R g 2.311 0.999 g 1.878 0.998 g 1.910 1.000
130 M a 2.311 0.999 a 1.926 0.999 a 1.910 1.000
131 K b 2.311 0.999 b 1.926 0.999 b 1.910 1.000
132 Q c 2.311 0.999 c 1.926 0.999 c 1.910 1.000
133 L d 2.311 0.999 d 1.926 0.999 d 1.910 1.000
134 E e 2.311 0.999 e 1.926 0.999 e 1.910 1.000
135 D f 2.311 0.999 f 1.926 0.999 f 1.910 1.000
136 K g 2.311 0.999 g 1.926 0.999 g 1.910 1.000
137 V a 2.311 0.999 a 1.926 0.999 a 1.910 1.000
138 E b 2.311 0.999 b 1.926 0.999 b 1.910 1.000
139 E c 2.311 0.999 c 1.926 0.999 c 1.910 1.000
140 L d 2.311 0.999 d 1.926 0.999 d 1.910 1.000
141 L e 2.311 0.999 e 1.926 0.999 e 1.910 1.000
142 S f 2.294 0.999 f 1.926 0.999 f 1.910 1.000
143 K g 2.294 0.999 g 1.926 0.999 g 1.910 1.000
144 N a 2.138 0.993 a 1.926 0.999 a 1.910 1.000
145 Y b 1.679 0.534 b 1.926 0.999 b 1.910 1.000
146 H c 1.647 0.455 c 1.926 0.999 c 1.910 1.000
147 L d 1.836 0.848 d 1.926 0.999 d 1.910 1.000
148 E e 1.836 0.848 e 1.926 0.999 e 1.910 1.000
149 N f 1.836 0.848 f 1.926 0.999 f 1.910 1.000
150 E g 1.836 0.848 g 1.926 0.999 g 1.910 1.000
151 V a 1.836 0.848 a 1.899 0.999 a 1.910 1.000
152 A b 1.836 0.848 b 1.851 0.997 b 1.910 1.000
153 R c 1.836 0.848 c 1.818 0.995 c 1.910 1.000
154 L d 1.836 0.848 d 1.818 0.995 d 1.910 1.000
155 K e 1.836 0.848 e 1.737 0.982 e 1.910 1.000
156 K f 1.836 0.848 f 1.737 0.982 f 1.910 1.000
157 L g 1.836 0.848 g 1.598 0.866 g 1.822 1.000
158 V a 1.836 0.848 a 1.598 0.866 a 1.803 1.000
159 G b 1.836 0.848 b 1.416 0.321 b 1.697 0.999
160 E c 1.836 0.848 c 1.416 0.321 c 1.697 0.999
161 R d 1.300 0.032 d 1.124 0.011 d 1.428 0.798
--- COILS HEADER: SUMMARY
--- best window has width of 28
---
--- COILS: SYMBOLS AND EXPLANATIONS ABBREVIATIONS
--- seq : one-letter amino acid sequence
--- normWin14 : window=14, normalised prob [0-9], 9=high, 0=low
--- normWin21 : window=21, normalised prob [0-9], 9=high, 0=low
--- normWin28 : window=28, normalised prob [0-9], 9=high, 0=low
---
COILS ....,....1....,....2....,....3....,....4....,....5
COILS seq TSLFDNDIPVTTDDVSLADKAIESTEEVSLVPSNLEVSTTSFLPTPVLED
COILS normWin14 00000000000000000000000000000000000000000000000111
COILS normWin21 00000000000000000000000000000000000000000000000000
COILS normWin28 00000000000000000000000000000000000000000000000000
COILS ....,....6....,....7....,....8....,....9....,....1
COILS seq AKLTQTRKVKKPNSVVKKSHHVGKDDESRLDHLGVVAYNRKQRSIPLSPI
COILS normWin14 11111111111000000000000000000000000000000000000000
COILS normWin21 00000000000000000000000000000000000000000000000000
COILS normWin28 00000000000000000000000000000000000000000000000000
COILS ....,....11...,....12...,....13...,....14...,....15
COILS seq VPESSDPAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENE
COILS normWin14 00000000000000000000002468999999999999999999548888
COILS normWin21 00000000000002227799999999999999999999999999999999
COILS normWin28 00000000001299999999999999999999999999999999999999
COILS ....,....16...,....17...,....18...,....19...,....20
COILS seq VARLKKLVGER
COILS normWin14 88888888880
COILS normWin21 99999988330
COILS normWin28 99999999997
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