Selected list of recent publications that have used our fold recognition server
dfischer@cs.bgu.ac.il
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Rigden, D. J. Iterative database searches demonstrate that glycoside hydrolase families 27, 31, 36 and 66 share a common evolutionary origin with family 13.
FEBS letters 523, 17-22, 2002.
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Janusz Bujnicki, Marcin Feder, Leszek Rychlewski and Daniel Fischer.
Errors in the D.radiodurans large ribosomal subunit structure
detected by protein fold-recognition and structure validation tools.
FEBS letters 525, 174-175, 2002.
- Fernando RODRIGUES-LIMA, Claudine DELOMENIE, Geoffrey H. GOODFELLOW, Denis M. GRANT and Jean-Marie DUPRET.
Homology modelling and structural analysis of human arylamine N-acetyltransferase NAT1: evidence for the conservation of a cysteine protease catalytic domain and an active-site loop. Biochem. J. (2001) 356, (327-334).
- Janusz Bujnicki, Leszek Rychlewski and Daniel Fischer. Fold-Recognition Detects an Error in the Protein Data Bank. Bioinformatics, 18:1391-1395, 2002
- Nagata Y, Mori K, Takagi M, Murzin AG and Damborsky J.
Identification of Protein Fold and Catalytic Residues of gamma-hexachlorocyclohexane dehydrochlorinase LinA. Proteins, 45:471-477, 2001.
- Rigden DJ, Monteiro AC, Grossi de Sa MF.
The protease inhibitor chagasin of Trypanosoma cruzi adopts an immunoglobulin-type fold and may have arisen by horizontal gene transfer.
FEBS Lett. 2001 Aug 24;504:41-4.
- Friedman JS, Koop BF, Raymond V and Walter MA. Isolation of a Ubiquitin-like (UBL5) Gene from a
screen identifying highly expressed and conserved Iris Genes. Genomics 71, 252-255, 2001
- Duan J, Dahlback B, Villoutreix BO. Proposed lipocalin fold for apolipoprotein M based on bioinformatics and site-directed mutagenesis. FEBS Letters 24965, 1-6, 2001.
- Mendel S et al. Acetohydroxyacid Syntase: A proposed structure for Regulatory Subunits Supported by Evidence from Mutagenesis. J. Mol. Biol. 307, 465-477, 2001.
- Rigden DJ, Mello LV, Bertioli DJ.
Structural modeling of a plant disease resistance gene product domain.
Proteins. 2000 Oct 1;41(1):133-43.
- Whisstock JC, Romero S, Gurung R, Nandurkar H, Ooms L,
Bottomley SP, Mitchell CA.
The inositol polyphosphate 5-phosphatases and the
Apurinic/Apyrimidinic base excision repair
endonucleases share a common mechanism for catalysis.
J Biol Chem. 2000
- Villoutreix, B. O., Akerstrom, B. and Lindqvist, A. Structural model of human
alpha1-microglobulin: proposed scheme for the interaction with the Gla domain of
anticoagulant protein C. Blood Coagulation and Fibrinolysis 2000, Vol 11, No. 3
- Ridgen, D. J. and Carneiro, M. A Structural Model for the rolA Protein and Its
Interaction With DNA. Proteins, 37:697, 2000.
- Velten, M & Billoutreix, B. O & Ladjimi, M. M. Biochem. , 39,307-315, 2000.
- Villoutreix, Blom, Dahlback.
Structural Prediction and Analysis of Endothelial Cell Protein
C/Activated Protein C Receptor.
Prot. Eng., 10, 833-840, 1999.
- Xu, N. & Dahlback, B. A Novel Human Apolipoprotein (apoM), J. Biol. Chem, 274, 31286, 1999
- Zhang, Y.Z, Gould, L. K, Dunbrack, R.L, Cheng, H, Roder, H & Golemis, E.A. The evolutionary conserved Dim1 protein defines a novel branch of the thioredoxin fold superfamily. In the press, 1999.
- Villoutreix, B. O. & Dahlback, B. Molecular Model for the C-type Lectin Domain of Human Thrombomudulin. J. Mol. Model, 4, 310, 1998.
- Villoutreix, B. O, Bucher, P, Hofmann, K, Baumgartner, S & Dahlback, B. Molecular Models for the two Discoidin Domains of Human Blood Coagulation Factor V. J. Mol. Model, 4, 268 , 1998.
- Kemmink, J, Darby, J. N.N., Dijkstra, K., Nilges, M. and Creighton, T. E. The folding catalyst protein disulfide isomerase is constructed of active and inactive thioredoxin modules. Current Biology, 7:239, 1997.
- Bazan, J. B., and Goodman, C. S. Modular structure of the Drosophila Beat protein. Current Biology, 7: R338, 1997.
- Osuna, J., Soberon, X., Morett, E. A proposed architecture for the Centraldomain of the bacterial enhancer-binding proteins based on secondary structure prediction and fold recognition. Prot. Sci. 6:543, 1997.