From krzysiek@godzik2.ljcrf.edu Sun Jan 10 00:12:43 1999 Date: Thu, 7 Jan 1999 18:44:20 -0800 From: Krzysztof Pawlowski To: dfischer@indigo.cs.bgu.ac.il Subject: cafasp submission SERVERNAME: BASIC (Adam Godzik group at The Burnham Institute) TARGET: T0068 PARAMETERS: DEFAULT URL: www.burnham-inst.org/godzik/cafasp SERVER URL: cape6.scripps.edu/leszek/genome RANK FOLD SCORE 1 1rmg_ 85.3 2 1air_ 18.0 3 1pcl_ 16.6 4 1idjA 14.3 5 0afp_ 6.31 6 1kit_ 5.79 7 1psm_ 4.57 8 1eut_ 4.48 9 1aac_ 3.90 10 1tdtA 3.87 END Note: Scores reported are Z-scores. The authors consider scores higher than 7 significant based on a fold recognition benchmark Note #2: The old server at Scripps is alive at the time of sending this out. We hope it stays so, but after the group has left Scripps we have no accounts there. A new server at Burnham is not up yet Alignment of target to the top hit in CASP3 format: R 4 T 10 T 5 S 11 V 6 A 12 S 7 S 13 E 8 T 14 P 9 K 15 K 10 G 16 A 11 A 17 P 12 T 18 S 13 K 19 S 14 T 20 C 15 C 21 T 16 N 22 V 17 I 23 L 18 A 28 K 19 V 29 A 20 A 30 D 21 D 31 S 22 N 32 S 23 T 34 T 24 D 35 A 25 V 36 T 26 G 37 S 27 P 38 T 28 A 39 I 29 I 40 Q 30 T 41 K 31 S 42 A 32 A 43 L 33 W 44 N 34 A 45 N 35 A 46 C 36 C 47 G 37 K 48 Q 38 S 49 G 39 G 50 K 40 G 51 A 41 L 52 V 42 V 53 K 43 Y 54 L 59 I 55 P 60 P 56 S 61 S 57 G 62 G 58 V 63 N 59 S 64 Y 60 L 65 A 61 L 66 L 62 I 67 N 63 D 68 T 64 G 70 W 65 V 71 V 66 T 72 T 67 L 73 L 68 R 74 T 69 A 75 G 70 V 76 G 71 N 77 S 72 N 78 A 73 A 79 T 74 K 80 A 75 S 81 I 76 F 82 Q 77 E 83 L 78 N 84 D 79 A 85 G 80 P 86 I 81 S 87 I 82 C 89 Y 83 G 90 R 84 V 91 T 85 V 92 G 86 D 93 T 87 T 94 A 88 N 95 S 89 G 96 G 90 K 97 N 91 F 102 M 92 I 103 I 93 T 104 A 94 A 105 V 95 T 106 T 96 S 107 D 97 T 108 T 98 T 109 T 99 N 110 D 100 S 111 F 101 G 112 E 102 I 113 L 103 Y 114 T 107 G 115 S 108 P 116 K 109 G 117 G 110 T 118 A 111 I 119 V 112 D 120 Q 113 G 121 G 114 Q 122 F 115 G 123 G 116 G 124 Y 117 V 125 V 118 K 126 Y 119 L 127 H 120 Q 128 A 121 L 146 E 122 K 147 G 123 Q 148 T 124 N 149 Y 125 T 150 G 126 P 151 A 127 R 152 R 128 L 153 I 129 I 154 L 130 Q 155 R 131 I 156 L 132 N 157 T 133 K 158 D 134 S 159 V 135 K 160 T 136 N 161 H 137 F 162 F 138 T 163 S 139 L 164 V 140 Y 165 H 141 N 166 D 142 V 167 I 143 S 168 I 144 L 169 L 145 I 170 V 146 N 171 D 147 S 172 A 148 P 173 P 149 N 174 A 150 F 175 F 151 H 176 H 152 V 177 F 153 V 178 T 154 F 179 M 155 S 180 D 156 D 181 T 157 G 182 C 158 D 183 S 159 G 184 D 160 F 185 G 161 T 186 E 162 A 187 V 163 W 188 Y 164 K 189 N 165 T 190 M 166 T 191 A 167 I 192 I 168 K 193 R 169 T 194 G 170 P 195 G 171 T 197 N 172 A 198 E 173 R 199 G 174 N 200 G 175 T 201 L 176 D 202 D 177 G 203 G 178 I 204 I 179 D 205 D 180 P 206 V 181 M 207 W 182 S 208 G 183 S 209 S 184 N 211 N 185 I 212 I 186 T 213 W 187 I 214 V 188 A 215 H 189 H 216 D 190 S 217 V 191 N 218 E 192 I 219 V 193 S 220 T 194 T 221 N 195 G 222 K 196 D 223 D 197 D 224 E 198 N 225 C 199 V 226 V 200 A 227 T 201 I 228 V 202 K 229 K 203 A 230 S 204 Y 231 P 205 T 237 A 206 R 238 N 207 N 239 N 208 I 240 I 209 S 241 L 210 I 242 V 211 L 243 E 212 H 244 S 213 N 245 I 214 E 246 Y 215 F 247 C 216 G 248 N 217 T 249 W 218 G 250 S 219 H 251 G 220 G 252 G 221 M 253 C 222 S 254 A 223 I 255 M 224 G 256 G 225 S 257 S 226 E 258 A 229 T 259 D 230 M 260 T 231 G 261 D 232 V 262 V 233 Y 263 T 234 N 264 D 235 V 265 I 236 T 266 V 237 V 267 Y 238 D 268 R 239 D 269 N 240 L 270 V 241 I 271 Y 242 M 272 T 243 T 273 W 244 G 274 S 245 T 275 S 246 T 276 N 247 N 277 Q 248 G 278 M 249 L 279 Y 250 R 280 M 251 I 281 I 252 K 282 K 253 S 283 S 254 D 284 N 255 S 286 G 256 A 287 G 257 A 288 S 258 G 289 G 259 V 290 T 260 V 291 V 261 N 292 S 262 G 293 N 263 V 294 V 264 R 295 L 265 Y 296 L 266 S 297 E 267 N 298 N 268 V 299 F 269 V 300 I 270 M 301 G 271 K 302 H 272 N 303 G 273 V 304 N 274 A 305 A 275 K 306 Y 276 P 307 S 277 I 308 L 278 V 309 D 279 I 310 I 280 D 311 D 281 T 312 G 282 V 313 Y 283 Y 314 W 284 E 315 S 285 K 316 S 286 K 317 A 289 E 318 V 290 G 319 A 291 S 320 G 292 N 321 D 293 V 322 G 294 P 323 V 295 D 324 Q 296 W 325 L 297 S 326 N 298 D 327 N 299 I 328 I 300 T 329 T 301 F 330 V 302 K 331 K 303 D 332 N 304 I 333 W 305 T 334 K 306 S 335 G 312 Q 336 A 313 T 337 T 314 K 338 R 315 G 339 P 316 V 340 P 317 V 341 I 318 V 342 R 319 L 343 V 320 N 344 V 321 G 345 C 322 E 346 S 323 N 347 D 324 A 348 T 325 K 349 A 326 K 350 P 327 P 351 C 328 I 352 T 329 E 353 D 330 V 354 L 331 T 355 T 332 M 356 L 333 K 357 E 334 N 358 D 335 V 359 I 336 K 360 A 337 L 361 I 338 T 362 W 339 S 363 T 340 D 364 E 341 S 365 S 342 T 366 L 347 W 367 Y 348 Q 368 L 349 I 369 C 350 K 370 R 351 N 371 S 352 V 372 A 353 T 373 Y 354