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Ph4PR PPPh4PR?م$م$م$PPhV$E M@(f E ʍ @ مE ʍ @ م\E ʍ @ م\Pf=U J$ 1E fPE PRE H$PPE Up(PPE P$PE P(PEPh7[^ÉUVSEPUE PUEPEPh EE;E|2EP$MREU U@(Rh P!EvE;E|vUMMR(M uuI(ff;u\EP$MU J$] :u>:EP$MREU U@(REPEPh  EbE;E}x M Y$u @ M Y$u   }M  @ M  WEP$MREU U@(Rh9E PE PhJ&E.& Phde[^ÉU SE|Ph} PS @    `:  YEE;E||lEPhp PEUЍE UEUЍEUBEUк@PEPEUкPEPEUPh P`E@]ٍM4E ]ٍM4DE]ٍM4DE`:]ٍMhE]ٍMhDEY]ٍMhDEY$E$E`:$E$E $E@$EPEPEPh&@E& h Pz]ÉU8/WVSDžDžDžDž EE؉;M|8t&E؉ 0E벐Dž~*ۅۅEt mۅۅ$PPPPh pM|`PM|XPM|PPM|PPhYhh`:hh h@,DžDžEM؉;E|M؉MUԋM؉M UЋM|Eԉ UhIE|MԉUhD HM|Eԉ UhDIE|AP]E|MԉUh H M|Eԉ UhDI(E|MԉUhD H0M|@X]M|Eԉ UhI8E|MԉUhD H@M|Eԉ UhDIHE|A`]E$E$E$UЉM4D$UЉE4D$UЉM4$8.0]E EEMM؉0<t5E؉ 0cM؉0<u5E؉ 0Et/ۅۅEt̉uH ̉u EQEQE Q0QlxẢuH ̉u EQEQE Q0QxM|`PM|XPM|PPM|PPhYhh`:hh h@,M|@`$M|@X$M|@P$$PPh., PDžDžEM؉;E| =&M؉0<E؉EUԋE؉E UЋE|MԉUh HM|Eԉ UhDIE|MԉUhD HM|@P]M|Eԉ UhI E|MԉUhD H(M|Eԉ UhDI0E|AX]E|MԉUh H8M|Eԉ UhDI@E|MԉUhD HHM|@`]E$E$E$UЉE4D$UЉM4D$UЉE4$&&0]EMEE|A`$E|AX$E|AP$$QQh, Qmۅ$[^_ÍvUE @    `:  YEE;E|gEE<HEEE UEEU3@UPEPUPEPEPh PC Mʍ U8   Mʍ Ul   Mʍ U8D   Mʍ UlD   Mʍ U8D   Mʍ UlD  EUÉULSEEY@EEEEEẺEE;E|E]؋ẺEEEEEUȋẺEEE EEUċUȉUeUEEhEE܍UȉUeUEEhEED܍UȉUeUEEhEED܍܅]UȉUeUEEhEE܍UȉUeUEEhEED܍UȉUeUEEhEED܍܅]UȉUeUEEhEE܍UȉUeUEEhEED܍UȉUeUEEhEED܍܅]E$E$E$UĉUeUEE4EED$UĉUeUEE4EED$UĉUeUEE4EE$N 0]E E EEHEE9EẺEEEЉEUEEEẺEEE ЉEUEEEUUeUEEhEE܍UUeUEEhEED܍UUeUEEhEED܍܅]UUeUEEhEE܍UUeUEEhEED܍UUeUEEhEED܍܅]UUeUEEhEE܍UUeUEEhEED܍UUeUEEhEED܍܅]E$E$E$UUeUEE4EED$UUeUEE4EED$UUeUEE4EE$}0]EEY@E EtBE EE EtE EtEEdE$E@ŰEEEPEȉEEPEŰEEEPEĉEEPẺEEPhP EEMEfdE$E@ŰEEEPEȉEEPEŰEEEPEĉEEPẺEEPh ʾ E/EEEE$蠾0EE$EERhI\]UPSEEY@EEEEEĉEE;E|lE]؋EĉEEEEEUEĉEEE EEUUUeUEEhEE܍UUeUEEhEED܍UUeUEEhEED܍܅]UUeUEEhEE܍UUeUEEhEED܍UUeUEEhEED܍܅]UUeUEEhEE܍UUeUEEhEED܍UUeUEEhEED܍܅]E$E$E$UUeUEE4EED$UUeUEE4EED$UUeUEE4EE$0]EE]EEuEE#@Eȃ$E$E$E$EEEEEuWjEPh uVLjEPh耜 uB,jEPh` uZ Xt&ÉUEE}Au C7}Ru G'}Du K}Nu O}Cu S}Qu W}Eu [}Gu _}Hu c}Iu g}Lu k}Ku o}Mu szv}Fu wjv}Pu {Zv}Su Jv}Tu :v}Yu *v}Wu v}Vu  vÐUS = t Ѓ;u]ÐUÐUS[7蟛]@?ERROR IN EIGENVALUE %d ERROR, Q is not normalized {Gz?threshold is %f REMARK FINDING THE BEST SUBSET BETWEEN PDB FILES %s AND %s REMARK CHECKING ALL CA-ATOMS IN %s APPEAR ALSO IN %s REMARK: ERROR: THERE ARE LESS THAN 5 RESIDUES THAT APPEAR BOTH REMARK: IN THE PREDICTION AND THE EXPERIMENTAL STRUCTURE REMARK: NOTHING DONE! REMARK COMPUTING SUPERPOSITION OF ALL %d PAIRS ; (%5.2f %5.2f %5.2f) REMARK THE EXPERIMENTAL STRUCTURE TRANSFORMED TO SUPERIMPOSE ALL THE PAIRS %3d: %3d%c %3d%c dist: %f RMS OF ALL %d PAIRS IS %f SEARCHING ALL %d - RESIDUE SEGMENTS REMARK BYE ?i= %3d END OF segment %d ; has %3d good pairs and rms= %5.2f THE BEST IS AT SEGMENT %d with %d pairs and rms of %f: REMARK RMS AFTER SUPERPOSITION OF BEST SUBSET REMARK YOUR GOOD MODEL COORDINATES REMARK (distances are shown after the x,y,z coordinates) %6.2f for %3d PAIRS REMARK YOUR MODEL COORDINATES; TOTAL: %3d REMARK RMS FOR ALL PAIRS (SAME TRANSFORMATION) GENERATING CA ATOMS WITH BEST TRANSFORMATION FOR NATIVE r Cannot open object file %s. %sATOM%d%f%f%f%d %s %5.2f %5.2f %5.2f REMARK Read %s from residue %d%c to residue %d%c, total: %d C-alphas %d %d WARNING : %d %c %d equal to %d: %d %c WARNING: %d %c RESIDUE NOT FOUND IN %s REMARK TOTAL PAIRS: %d in fill length= %d in fill k=%d %3d %3d:%c %3d:%c %d , pi = %d pj= %d %4.2f %4.2f %4.2f %4.2f %4.2f %4.2f exiting fill times= %d lastgoods= %d goods= %d = different= %d dif/last= %f AFTER BESL: %3d : RETURNING %d with RMS %f (%5.2f %5.2f %5.2f) AFTER RECOMP %3d : RETURNING %d with RMS %f (%5.2f %5.2f %5.2f) ? %3d: %3d%c %3d%c dist: %f BAD REMARK HAS %d AT RMS %5.3f ATOM %3d CA %3s %3d %8.3f%8.3f%8.3f %5.1f 0.00 1 REMARK HAS %d AT RMS %5.3f. #@ATOM %3d CA %3s %3d %7.3f %7.3f %7.3f %5.1f 0.00 1 TER REMARK HAS %d AT RMS %5.3f. WITH A COMPUTED GL SCORE OF %7.3f , MAXSUB: %5.3f (CA'S IN PDB: %d) #@/users/stud/meantime/dfischer/ca/%swalignment%s %s %3d %c %3d %c %3d %3d:%c %3d:%c %c in obj2 DIFFERENT than %c in seq %c in obj1 DIFFERENT than %c in seq1 pj= %d coords %4.2f %4.2f %4.2f transformed %4.2f %4.2f %4.2f other coords pj = %d %4.2f %4.2f %4.2f ATOM %3d CA %3s %3d %7.3f %7.3f %7.3f 1.00 0.00 1 Distances: <3 <6 <10 <15 >15 %3d nlarge %d, largerms %f trms %f ALL RMS= %f WITHOUT LARGE: RMS= %f @@$@.@%sr Cannot open object file %s. %d %stoo big %s%s%d%f%f%fNpoints: j=%d, Considered: jj=%d Npoints: j=%d, Considered: jj=%d ALAARGASPASNCYSGLNGLUGLYHISILELEULYSMETPHEPROSERTHRTYRTRPVALASGLUNK @ `:Y@ffffff@@xp  *:JZjzʆچ *:  (h؁   ooopOdtdt+<:i,x:_y5_s-n-Y=t(;-s$B?- 1!I"_#v%&1234 5" 6< 8U 9o ; = > ? @ A B% C< DU El F G H I N Q+ RE S] Tv V Y o r u' {A |^ { ' D ^ UO  7"vS3;BE<zRY]5k7wsx- #$%&9 "dtinit.c/usr/src/bs/BUILD/glibc-2.1.3/csu/gcc2_compiled.int:t(0,1)=r(0,1);0020000000000;0017777777777;char:t(0,2)=r(0,2);0;127;long int:t(0,3)=r(0,1);0020000000000;0017777777777;unsigned int:t(0,4)=r(0,1);0000000000000;0037777777777;long unsigned int:t(0,5)=r(0,1);0000000000000;0037777777777;long long int:t(0,6)=r(0,1);01000000000000000000000;0777777777777777777777;long long unsigned int:t(0,7)=r(0,1);0000000000000;01777777777777777777777;short int:t(0,8)=r(0,8);-32768;32767;short unsigned int:t(0,9)=r(0,9);0;65535;signed char:t(0,10)=r(0,10);-128;127;unsigned char:t(0,11)=r(0,11);0;255;float:t(0,12)=r(0,1);4;0;double:t(0,13)=r(0,1);8;0;long double:t(0,14)=r(0,1);12;0;complex int:t(0,15)=s8real:(0,1),0,32;imag:(0,1),32,32;;complex float:t(0,16)=r(0,16);4;0;complex double:t(0,17)=r(0,17);8;0;complex long double:t(0,18)=r(0,18);12;0;void:t(0,19)=(0,19)../include/libc-symbols.h/usr/src/bs/BUILD/glibc-2.1.3/build-i386-linux/config.h../include/libintl.h../intl/libintl.h../include/features.h../include/sys/cdefs.h../misc/sys/cdefs.h/usr/lib/gcc-lib/i386-redhat-linux/egcs-2.91.66/include/stddef.h../include/locale.h../locale/locale.hlconv:T(10,1)=s48decimal_point:(10,2)=*(0,2),0,32;thousands_sep:(10,2),32,32;\grouping:(10,2),64,32;int_curr_symbol:(10,2),96,32;\currency_symbol:(10,2),128,32;mon_decimal_point:(10,2),160,32;\mon_thousands_sep:(10,2),192,32;mon_grouping:(10,2),224,32;\positive_sign:(10,2),256,32;negative_sign:(10,2),288,32;\int_frac_digits:(0,2),320,8;frac_digits:(0,2),328,8;\p_cs_precedes:(0,2),336,8;p_sep_by_space:(0,2),344,8;\n_cs_precedes:(0,2),352,8;n_sep_by_space:(0,2),360,8;\p_sign_posn:(0,2),368,8;n_sign_posn:(0,2),376,8;;../include/xlocale.h../locale/xlocale.h__locale_struct:T(13,1)=s36__locales:(13,2)=ar(0,1);0;5;(13,3)=*(13,4)=xslocale_data:,0,192;\__ctype_b:(13,5)=*(0,9),192,32;__ctype_tolower:(13,6)=*(0,1),224,32;\__ctype_toupper:(13,6),256,32;;__locale_t:t(13,7)=(13,8)=*(13,1)../sysdeps/unix/sysv/linux/_G_config.h../sysdeps/unix/sysv/linux/bits/types.hsize_t:t(16,1)=(0,4)__u_char:t(15,1)=(0,11)__u_short:t(15,2)=(0,9)__u_int:t(15,3)=(0,4)__u_long:t(15,4)=(0,5)__u_quad_t:t(15,5)=(0,7)__quad_t:t(15,6)=(0,6)__int8_t:t(15,7)=(0,10)__uint8_t:t(15,8)=(0,11)__int16_t:t(15,9)=(0,8)__uint16_t:t(15,10)=(0,9)__int32_t:t(15,11)=(0,1)__uint32_t:t(15,12)=(0,4)__int64_t:t(15,13)=(0,6)__uint64_t:t(15,14)=(0,7)__qaddr_t:t(15,15)=(15,16)=*(15,6)__dev_t:t(15,17)=(15,5)__uid_t:t(15,18)=(15,3)__gid_t:t(15,19)=(15,3)__ino_t:t(15,20)=(15,4)__mode_t:t(15,21)=(15,3)__nlink_t:t(15,22)=(15,3)__off_t:t(15,23)=(0,3)__loff_t:t(15,24)=(15,6)__pid_t:t(15,25)=(0,1)__ssize_t:t(15,26)=(0,1)__rlim_t:t(15,27)=(0,3)__rlim64_t:t(15,28)=(15,6)__id_t:t(15,29)=(15,3)__fsid_t:t(15,30)=(15,31)=s8__val:(15,32)=ar(0,1);0;1;(0,1),0,64;;__daddr_t:t(15,33)=(0,1)__caddr_t:t(15,34)=(10,2)__time_t:t(15,35)=(0,3)__swblk_t:t(15,36)=(0,3)__clock_t:t(15,37)=(0,3)__fd_mask:t(15,38)=(0,5)__fd_set:t(15,39)=(15,40)=s128fds_bits:(15,41)=ar(0,1);0;31;(15,38),0,1024;;__key_t:t(15,42)=(0,1)__ipc_pid_t:t(15,43)=(0,9)__blkcnt_t:t(15,44)=(0,3)__blkcnt64_t:t(15,45)=(15,6)__fsblkcnt_t:t(15,46)=(15,4)__fsblkcnt64_t:t(15,47)=(15,5)__fsfilcnt_t:t(15,48)=(15,4)__fsfilcnt64_t:t(15,49)=(15,5)__ino64_t:t(15,50)=(15,4)__off64_t:t(15,51)=(15,24)__t_scalar_t:t(15,52)=(0,3)__t_uscalar_t:t(15,53)=(0,5)__intptr_t:t(15,54)=(0,1)../linuxthreads/sysdeps/pthread/bits/pthreadtypes.h../sysdeps/unix/sysv/linux/bits/sched.h__sched_param:T(18,1)=s4sched_priority:(0,1),0,32;;_pthread_fastlock:T(17,1)=s8__status:(0,3),0,32;__spinlock:(0,1),32,32;;_pthread_descr:t(17,2)=(17,3)=*(17,4)=xs_pthread_descr_struct:pthread_attr_t:t(17,5)=(17,6)=s36__detachstate:(0,1),0,32;\__schedpolicy:(0,1),32,32;__schedparam:(18,1),64,32;\__inheritsched:(0,1),96,32;__scope:(0,1),128,32;\__guardsize:(16,1),160,32;__stackaddr_set:(0,1),192,32;\__stackaddr:(17,7)=*(0,19),224,32;__stacksize:(16,1),256,32;;pthread_cond_t:t(17,8)=(17,9)=s12__c_lock:(17,1),0,64;\__c_waiting:(17,2),64,32;;pthread_condattr_t:t(17,10)=(17,11)=s4__dummy:(0,1),0,32;;pthread_key_t:t(17,12)=(0,4)pthread_mutex_t:t(17,13)=(17,14)=s24__m_reserved:(0,1),0,32;\__m_count:(0,1),32,32;__m_owner:(17,2),64,32;\__m_kind:(0,1),96,32;__m_lock:(17,1),128,64;;pthread_mutexattr_t:t(17,15)=(17,16)=s4__mutexkind:(0,1),0,32;;pthread_once_t:t(17,17)=(0,1)_pthread_rwlock_t:T(17,18)=s32__rw_lock:(17,1),0,64;__rw_readers:(0,1),64,32;\__rw_writer:(17,2),96,32;__rw_read_waiting:(17,2),128,32;\__rw_write_waiting:(17,2),160,32;__rw_kind:(0,1),192,32;\__rw_pshared:(0,1),224,32;;pthread_rwlock_t:t(17,19)=(17,18)pthread_rwlockattr_t:t(17,20)=(17,21)=s8__lockkind:(0,1),0,32;\__pshared:(0,1),32,32;;pthread_t:t(17,22)=(0,5)wchar_t:t(19,1)=(0,3)wint_t:t(19,2)=(0,4)_G_int16_t:t(14,1)=(0,8)_G_int32_t:t(14,2)=(0,1)_G_uint16_t:t(14,3)=(0,9)_G_uint32_t:t(14,4)=(0,4)_IO_stdin_used:G(0,1)GCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release)GCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release)GCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release)GCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release)GCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release)GCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release)GCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release)GCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release)GCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release)01.0101.0101.0101.0101.0101.0101.0101.0101.01.symtab.strtab.shstrtab.interp.note.ABI-tag.hash.dynsym.dynstr.gnu.version.gnu.version_r.rel.got.rel.bss.rel.plt.init.plt.text.fini.rodata.data.eh_frame.ctors.dtors.got.dynamic.bss.stab.stabstr.comment.note# 1((7 ؁?hhGopp2ToPc l u    ~/`PP|dkl  yX y y z  zdp pz  {H  {P pO%h4 @ $1(؁hp    P      p  h t "  - 1 ? K a tȇ ( Ї   "           Д       !p *1t"R ^:pw$$| @ M   4 @O ̙r    4D$x ؈; T">y K`:@NT X g y|. $  ^ @   Y@P d |   P  x4t!( y1 }6I$" W c h m q  )DU qĆ  @H Ԇ` @!$3 : PhU Y a@j}y@Д $ @@ ( 6 f  P  4"initfini.cgcc2_compiled.init.ccrtstuff.cp.2__DTOR_LIST__completed.3__do_global_dtors_aux__EH_FRAME_BEGIN__fini_dummyobject.8frame_dummyinit_dummyforce_to_data__CTOR_LIST____do_global_ctors_aux__CTOR_END____DTOR_END____FRAME_END__eigen.fbesl.cmain.crms.cComputeRo1_DYNAMIC_etext__register_frame_info@@GLIBC_2.0Compute_Rmsstrcmp@@GLIBC_2.0_fp_hwfprintf@@GLIBC_2.0fflush@@GLIBC_2.0Reportrms2Extendszpmzpobject2myeigen_ComputeT_inits1tred2_malloc@@GLIBC_2.0fscanf@@GLIBC_2.0ComputeSIGMApxtql2___deregister_frame_info@@GLIBC_2.0CenterOfMasssxReadModelFillByNewMatchstdout@@GLIBC_2.0GetCorrespondencestderr@@GLIBC_2.0syppoints_distCheckOkTh5SEGMENTLENGTHsz_startfgets@@GLIBC_2.0printedComputeQirmsFillOneSegmentPrintCasobject1atof@@GLIBC_2.0seqname2rms1strncmp@@GLIBC_2.0mychar_malloc__bss_startTh35mainsxp__libc_start_main@@GLIBC_2.0data_startprintf@@GLIBC_2.0_finiThreeLetterNamesqrt@@GLIBC_2.0fclose@@GLIBC_2.1s2ComputeRmsmzOneLetterNameexit@@GLIBC_2.0PrintNativesysscanf@@GLIBC_2.0_edata_GLOBAL_OFFSET_TABLE__endmypReadCasseqname1strncpy@@GLIBC_2.0fopen@@GLIBC_2.1foldl_IO_stdin_usedbeslsprintf@@GLIBC_2.0__data_startmxo2PrintModelinNativeshort_mallocGetBestSubsetmxptargetlpythag___gmon_start__strcpy@@GLIBC_2.0