CONFIDENCE THRESHOLDS FOR THE SERVERS
PDB-BLAST
Significance Cutoff < 0.1
FFAS
Contact E-mail : adam@burnham-inst.org
Primary Score Parameter : Z-score
Significance Cutoff > 8.0
3D-PSSM
Contact E-mail : kelley@icrf.icnet.uk
Primary Score Parameter : E-value
Significance Cutoff < 0.37
GENTHREADER and mGENTHREADER
Contact E-mail : David.Jones@brunel.ac.uk
Primary Score Paramater : unknown
Significance Cutoff : unknown
BIOINBGU
Contact E-mail : dfischer@cs.bgu.ac.il
Significance cutoff :
- gonp > 6
- gonpm > 6
- seqpprf > 7
- seqpmprf > 7
- pfseq > 6
- consensus :
- 19+ most probably certain
- 15-19 highly probable
- 12-15 probable only if at least one of the
five methods is above the corresponding threshold
SAM T-98 and SAM T-99
Contact E-mail : karplus@cse.ucsc.edu
Primary Score Parameter : E-value for SAM T-99
Significance Cutoff < approx 0.01 for SAM T-99 and <-20 for SAM T-98
FUGUE
Contact E-Mail : kenji@cryst.bioc.cam.ac.uk
Primary Score Parameters : Z-score
Significance Cutoff > 6
P - MAP
Contact E-mail : wjb@dnamining.com
Primary Score Parameters : E-value
Significance Cutoff < 0.01
SAUSAGE
Contact E-mail : arussell@rsc.anu.edu.au
Primary Score Parameters : Rank
Significance Cutoff : UNKNOWN