WARNING

These summaries were manually compiled by Amir Mishalia mishalia@cs.bgu.ac.il and Nir Esterman esterman@cs.bgu.ac.il . The scores, pdb names and the SCOP codes listed may contain errors. Despite efforts to obtain the most accurate information in these summaries, errors may appear and we assume no responsibility regarding the contents listed. However, if you find errors or typos in the below information, please e-mail Nir, Amir and/or Dani Fischer dfischer@cs.bgu.ac.il and we would be more than happy to correct them. t0105

Fold Number of servers that found the fold Number of times fold was found Number of times fold was found at rank 1 Number of times fold scored within ~10% of threshold selected server/pdb
2.1 9 15 4 1
2.47 6 8 4 0
7.14 5 5 2 0
4.77 2 5 1 0

T0105

SERVER NAME HIT1 S1 HIT2 S2 HIT3 S3 HIT4 S4 HIT5 S5 List of top 5 pdb codes
PDB-BLAST
<0.1
1ruxA 3.4 2.12.2 3.4 3.1.7 3.4 3.1.7 3.4 3.2.1
4.140.1
7.7 1ruxA
1dhx
1egzB
1egzA
1cetA
FFAS
>8.0
2.47.1 6.33 2.40.1 5.80 1dzd 5.68 2.40.1 4.82 1.27.1 4.58 1lybC
1qqlA
1dzdA
1qqkB
1d9gB
3D-PSSM
<0.37
2.1.2 4.16 7.7.1 4.64 7.18.1 5.64 7.15.1 8.01 4.48.7 8.29 1cfb1
1lsi
1qubA5
2bus
1b7fA2
GENTHREADER
>0.7
2.1.1 0.584 7.9.1 0.081 7.35.1 0.077 3.31.1
7.39.2
0.072 1.36.1 0.072 1iraY1
1bnb
1bbo2
1zin2
1r69
m-GENTHREADER
>0.7
3.31.1 4.40.1 0.176 7.37.1 0.116 2.47.1 0.094 2.47.1 0.094 7.37.1 0.088 2reb2
1cxxA2
1lybA1
1lybA0
1cxxA0
BIOINBGU(gonp)
>6.0
7.3.11 4.9 2.47.1 3.8 7.14.1 3.3 1.127.1 3.1 7.18.1 3.0 1emn
1lyaA
1kdu
2cdv
1vvc
BIOINBGU(gonpm)
>6.0
7.14.1 4.1 1ilm 4.0 1.56.1 3.6 4.8.1 3.4 3.31.1
4.40.1
3.4 1kdu
1ilmA
1hnr
1b2t
2reb
BIOINBGU(seqpprf)
>7.0
2.47.1 4.6 7.7.1 3.2 2.52.1 3.1 7.7.1 3.1 7.39.3 3.0 1lyaA
1abtA
1bak
1fas
1pft
BIOINBGU(seqmprf)
>7.0
3.3.1
4.72.1
3.3 1.56.1 3.3 3.31.1 2.9 1ilm 2.9 7.9.1 2.8 1fcdA
1hnr
1ceeB
1ilmA
1bnb
BIOINBGU(prfseq)
>6.0
2.1.2 4.3 7.22.1 4.0 1bny 3.3 7.3.11 3.3 7.14.1 3.3 1cfb
1ata
1bny
1emn
1kdu
BIOINBGU(consensus)
>12.0
2.47.1 6.6 7.14.1 6.1 7.3.11 6.0 2.1.2 4.8 1ilm 3.4 1lyaA
1kdu
1emn
1cfb
1ilmA
SAM-T99
<0.01
1scmA 32.43 4.18.1 42.05 4.18.1 42.05 4.18.1 42.05 2.40.4 47.4 1scmA
1a3s
1u9aA
1u9b
1tie
FUGUE
>6
1.116.1 2.73 1.4.1 2.73 4.77.1 2.69 2.1.1 2.59 2.5.1
6.2.1
2.42 1ak0
1ignA
2pldB
1qfhA
2occB
P-MAP
<0.05
2.47.1 23.2 2.47.1 25.3 2.52.1 29.7 10.55.1 36.6 3.1.7 47.0 1lyaC
2sam
1btkB
1jsuC
1egzB
SAUSSAGE
n.a
7.14.1 2.18 4.80.1 2.02 2.1.1 1.85 4.84.1 1.84 2.1.1 1.76 5hpgA
1dhn
1eapB
1qhkA
1jhlH
ssPsi
n.a.
4.77.1 323 4.77.1 312 4.77.1 300 2.55.1
3.1.11
3.44.1
282 4.77.1 281 1ab2
1csyA
1blj
1a3wA
2pna
RPFOLD
n.a.
11.10.1 75.81 1bn2 74.73 2.8.1 74.50 2.10.1 74.44 1.126.4 74.10 1mey
1bn2
1npoC
ibhu
2prgC
LOOPP
n.a.
4.15.1 4.2 2.1.1 3.0 3.31.1
4.40.1
3.0 2.1.1 2.8 3.38.1 2.8 1mnl
1iraY
2reb
1dvfD
1nocB
THREADWITHSEQ
n.a.
2.1.1 1.75 2.1.6 1.51 2.1.2 1.42 2.1.1
3.1.7
4.24.3
1.31 2.1.1 0.61 1kb5B
1edhA
1ten
1ctn
1tvdA
123D+
n.a.
2.66.1 4.24 7.18.1 4.19 7.12.1 3.53 2.1.1 3.33 4.84.1 3.06 1avaA1
1hfi
1ldr
3fruA1
1div