WARNING

These summaries were manually compiled by Amir Mishalia mishalia@cs.bgu.ac.il and Nir Esterman esterman@cs.bgu.ac.il . The scores, pdb names and the SCOP codes listed may contain errors. Despite efforts to obtain the most accurate information in these summaries, errors may appear and we assume no responsibility regarding the contents listed. However, if you find errors or typos in the below information, please e-mail Nir, Amir and/or Dani Fischer dfischer@cs.bgu.ac.il and we would be more than happy to correct them. t0096 table

T0096 N-terminus

Fold Number of servers in which fold was found Number of times fold was found Number of times fold found at rank 1 Number of times fold found sithing ~10% of threshold selected server/pdb
1.4 11 25 6 2 SAMT98/1lea
1.74 8 9 2 0
1.37 6 6 3 0

T0096 C-terminus

Fold Number of servers in which fold was found Number of times fold was found Number of times fold found at rank 1 Number of times fold found sithing ~10% of threshold selected server/pdb
NONE See note below
1.25 6 10 4
4.91 5 8 0
1.1 5 8 1
The consensus prediction is given by the most frequent fold appearing within the top 5 hits of all servers. The consensus prediction is selected from one of the servers that scored the fold the strongest.
NOTE: Because the most frequently hit fold here was only hit a small number of times, there appears to be no consensus for this domain. Thus, the "correct" prediction from the servers should be: "No prediction obtained with confidence". This could be consistent with the case that the target is a new fold, but also with the case that the target is very distantly related in sequence and/or structure to a known fold. In the latter case, and because of the allowed guesswork allowed here, one of the listed folds may be used as a "bet".

T0096

SERVER NAME HIT1 S1 HIT2 S2 HIT3 S3 HIT4 S4 HIT5 S5 List of top 5 pdb codes
PDB-BLAST
<0.1 		3.3.1
4.14.1 		3e-06 3.3.1
4.14.1 		8e-05 3.3.1
4.14.1 		8e-05 1.4.4
2.77.4 		1.7e-02 1.4.4
2.77.4 		1.7e-02 1pbf
1iuw
1pbe
3gapB
3gapA
FFAS
>8.0 		1.4.4
1.74.1 		7.05 3.50.3 5.8.1 6.39 1.19.1 2.2.5 4.77.1 5.51 5.7.1 4.97 1qpi 4.87 1ddnA
1qtmA
1bg1A
1qgxA
1qpiA
3D-PSSM
<0.37 		8.4.1 3.67 1.7.1 4.25 1.37.1
1.114.1 		4.72 1.106.1
3.31.1 		5.59 1.63.1 5.60 1av1A
1quuA
1bjz
1dg3A1
1aep
GENTHREADER
>0.7 		1.4.4 0.144 1.4.4
2.77.4 		0.143 3.31.1 0.131 1.4.4 0.131 2.49.2
4.27.1 		0.125 1lea
2cgpC1
1pjr
1qbjA
1qcsA2
m-GENTHREADER
>0.7 		1.4.4
2.32.1
4.87.1 		0.876 1.4.4 0.796 1.4.4
2.77.4 		0.760 1.4.4
1.74.1
2.32.1 		0.423 3.3.1
4.14.1 		0.286 1bia1
1lea
2cgpC1
1bi11
1pbe
BIOINBGU(gonp)
>6.0 		1.37.1
1.114.1 		3.7 6.2.1 3.6 1.122.1 3.5 3.1.9 3.4 1.97.4
1.110.6 		3.3 2tct
1occC
1ppr
1b4e
1ft1
BIOINBGU(gonpm)
>6.0 		1.108.1 4.3 1.37.1
1.114.1 		3.5 1.97.4
1.110.6 		3.0 1.42.1 2.9 6.2.1 2.8 1pbwA
2tct
1ft1
1qag
1occC
BIOINBGU(seqpprf)
>7.0 		1.37.1
1.114.1 		4.4 4.2.1 3.9 1.110.8 3.6 1.91.1 3.1 1.4.4
1.74.1
2.32.1 		3.1 2tct
1qgi
1qqe
2abk
2dtr
BIOINBGU(seqmprf)
>7.0 		1.110.8 4.1 1.37.1
1.114.1 		3.9 4.2.1 3.6 1.97.4
1.110.6 		3.4 1.4.4
1.74.1
2.32.1 		3.3 1qqe
2tct
1qgi
1ft1
2dtr
BIOINBGU(prfseq)
>6.0 		1.110.1 4.6 1.30.1
3.31.1 		3.2 1.25.1 3.0 1.25.2 3.0 1.25.1
8.4.1 		2.9 1lrv
1ffh
1le2
1was
1av1
BIOINBGU(consensus)
>12.0 		1.37.1
1.114.1 		12.0 1.110.8 5.5 1.110.1 4.9 1.108.1 4.8 4.2.1 3.2 2tct
1qqe
1lrv
1pbwA
1qgi
SAM-T98
<-20 		1.4.4 -31 1tdx -27.55 1.4.4 -24.92 1.4.4
1.74.1
2.32.1 		-24.26 1.4.4
2.77.4 		-20.46 1lea
1tdx
1leb
2dtr
3gapA
SAM-T99
<0.01 		1qaaA 0.1476 1qaaB 0.1476 1.4.4 0.7096 1.4.4
1.74.1
2.32.1 		0.8369 1.4.4
1.74.1
2.32.1 		1.059 1qaaA
1qaaB
1leb
1bi0
2dtr
FUGUE
>6 		1.4.4
1.74.1
2.32.1 		4.73 1.4.4 4.40 1.4.4 2.77.4 3.45 3.88.1 3.40 1.26.1 2.99 1bi1
1qbjA
2cgpC
1gca
1afrA
P-MAP
<0.05 		3.3.1
4.14.1 		9.35e-04 1.4.4 4.25e-03 3.3.1
4.14.1 		4.88e-03 3.3.1 4.14.1 5.32e-03 3.3.1 4.14.1 5.46e-03 1pbf
1lea
1cc4
1dob
1bkw
SAUSSAGE
n.a 		1.47.1
3.42.1 		2.51 3.89.1 2.45 1.7.1 2.43 2.44.1 2.36 4.132.1 2.35 1ljrA
1lst
1quuA
5ptp
1rypD
ssPsi
n.a. 		1.65.1 847 1.26.1 838 3.1.18
3.16.5 		836 3.1.9 835 1.60.3
3.48.1
3.50.3
5.8.1 		823 1ann
1afrA
2reqB1
1fbaA
1taq
RPFOLD
n.a. 		1.4.1 72.87 4.2.1 72.69 5.18.1 72.41 5.18.1 72.40 1.4.4
1.74.1 		72.31 1ignA
1chkA
1jud
1zrm
2tdx
LOOPP
n.a. 		1.41.1
7.3.11
7.15.1 		4.5 1.47.1
3.42.1 		4.0 1.110.1 3.3 1.27.1 3.1 4.4.1 3.1 1nubA
2ljrA
1lrv
1huw
1smnA